View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-4 (Length: 995)
Name: NF5606-Insertion-4
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 334 - 989
Target Start/End: Complemental strand, 28691292 - 28690639
Alignment:
| Q |
334 |
ccatgatccctttgaagttaatgtaatcttcctcggaagaattgtgattgttatccaaaatgagctcagaaagttgtggaacataatgtcctgaaatttc |
433 |
Q |
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| T |
28691292 |
ccatgatccctttgaagttaatgtaatcttcctcggaagaattgtgattgttatccaaaatgagctcagaaagttgtggaacataatgtcctgaaatttc |
28691193 |
T |
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| Q |
434 |
aatacaaacccaaattaatttaaagttaggaacttagtatctattaaaattattttacaagttaaatatacctgcatagctttcaccagcaatgtagaaa |
533 |
Q |
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| T |
28691192 |
aatacaaacccaaattaatttaaagttaggaacttagtatttattaaaattattttacaagttaaatatacctgcatagctttcaccagcaatgtagaaa |
28691093 |
T |
|
| Q |
534 |
tcatgtgatttaaattgaggaaatcttttaaaccaattgatgaggaatgtgtgtgaatccttagctggtcaatgaaacaaagtattcatcaataaatcac |
633 |
Q |
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| T |
28691092 |
tcatgtgatttgaattgaggaaatcttttaaaccaattgatgaggaatgtgtgtgaatccttagctggtcaatgaaacaaagtattcatcaataaatcac |
28690993 |
T |
|
| Q |
634 |
attaagtgaaagtactaataaaaattgtatcaatccttagatgatatatagaattattgttacctgtaatggtgtcaccaagttcacttatatcactggt |
733 |
Q |
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| T |
28690992 |
attaagtgaaagtactaataaaaattgtatcaatccttagatgatatatagaattattgttacctgtaatggtgtcaccaagttcacttatatcactggt |
28690893 |
T |
|
| Q |
734 |
ggtgttggtgtaagaaaatcccactccagcaggggattcaagaaacaaaagatttgcagctgtagaaaagatttagtttatttttaaaattgtacaggat |
833 |
Q |
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| T |
28690892 |
ggtgttggtgtaagaaaatcccactccagcaggggattcaagaaacaaaagatttgcagctgtagaaaagatttagtttatttttaaaattgtacaagat |
28690793 |
T |
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| Q |
834 |
atacaaagtttatctcaattaacaaatttac-atgaattgaactaccattattgcaatgcattgtgaaagttatcaat---ttgaaattgacccaccttt |
929 |
Q |
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| T |
28690792 |
atacaaagtttatct-------caaatttacaatgaattgaactaccatttttgcaatgcattgtgaaagttatcaatttattgaaattgacccaccttt |
28690700 |
T |
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| Q |
930 |
attccaagaatatgggttcaac-tgagcttaggttggctgctattttgggggaaaaagggt |
989 |
Q |
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| T |
28690699 |
attccaagaatatgggttcaacttgagcttaggttggctgctattttgggggaaaaagggt |
28690639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 284
Target Start/End: Complemental strand, 28691638 - 28691366
Alignment:
| Q |
12 |
cttctgacgttgctgatattgctgaaacacatgggagcgtacaagctatacatgtctataatcttatacacatcaaagtatttattaagttctgtattgc |
111 |
Q |
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| T |
28691638 |
cttctgacgttgctgatattgctgaaacacatgggagcgtacaagctatacatgtctataatcttatacacatcgaagtatttattaagttctgtattgc |
28691539 |
T |
|
| Q |
112 |
attcatctgtttgattttgaattggatggctgaagttgcatatggttgtgatgttatggtataaaccatcagatattactgcatgctcccatgcatattc |
211 |
Q |
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| T |
28691538 |
attcatctgtttgattttgaattggatggctgaagttgcatatggttgtgatgttatgatataaaccatcagatattactgcatggtcccatgcatactc |
28691439 |
T |
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| Q |
212 |
tatcatacctttttgatctgtttcatcatccaataaagcatttccaatctataccaaacatttcattgtgtca |
284 |
Q |
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| T |
28691438 |
tatcatacctttttgatctgtttcatcatccaataaagcatttccaatctgtaccaaacatttcattgtgtca |
28691366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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