View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606-Insertion-9 (Length: 628)
Name: NF5606-Insertion-9
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 153 - 628
Target Start/End: Original strand, 39824006 - 39824481
Alignment:
| Q |
153 |
aggacatagaatcataaacatatgagtttgaatttgatagggtttcatcaggaatataatgaagcatcatgtgacaatttataaccaaagcttcacctga |
252 |
Q |
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| T |
39824006 |
aggacatagaatcataaacatatgagtttgaatttgatagggtttcatcaggaatataatgaagcatcatgtgacaatttataaccaaagcttcacctga |
39824105 |
T |
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| Q |
253 |
ataaaccaaacgttgaaccctcaaatgttcaatcaaagaagcaaaaccatttgtgtaacttgaagaaactactctgaattccaatgtcacgtttcttgac |
352 |
Q |
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| T |
39824106 |
ataaaccaaacgttgaaccctcaaatgttcaatcaaagaagcaaaaccatttgtgtaacttgaagaaactactctgaattccaatgtcacgtttcttgac |
39824205 |
T |
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| Q |
353 |
ctagcaaaattcaccaacttagaacctaattcttcataagaaagatcaagttttggtggaattggttgatcactgttgctattagcatgatcagaaacag |
452 |
Q |
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| T |
39824206 |
ctagcgaaattcaccaacttagaacctaattcttcataagaaagatcaagttttggtggaattagttgatcactgttgcaattagcatgatcagaaacag |
39824305 |
T |
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| Q |
453 |
tgagtttgattaaaggagcaacttcgtggcgattagcaatagcatcgattaatgtaggaatctgcatgcaatgagttgaactcaaatcaactatatgaat |
552 |
Q |
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| T |
39824306 |
tgagtttgattaaaggagcaacttcgtggcgattagcaatagcatcgattaatgtaggaatctgcatgcaatgagttgaactcaaatcaactatatgaat |
39824405 |
T |
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| Q |
553 |
cactgagaaaccttctgttgcttccagaattgctgcattagcggctgcgtacccaaatcgatgccaaggtgttaaa |
628 |
Q |
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| T |
39824406 |
cactgagaaaccttctgttgcttccagaattgctgcattagcagctgcgtacccaaatcgatgccaaggtgttaaa |
39824481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 39823858 - 39823968
Alignment:
| Q |
8 |
cttaatctactaaccaagttgtttgaagttaaatcaacatcttcatctactaaaataacaagtgttggatctaaacctcgaagcgcgttaagaaacaatg |
107 |
Q |
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| T |
39823858 |
cttaatctactaaccaagttgtttgaagttaaatcaacatcttcatctactaaaataacaagtgttggatctaaacctcgaagcgcgttaagaaacaatg |
39823957 |
T |
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| Q |
108 |
acctaagagac |
118 |
Q |
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| T |
39823958 |
acctaagagac |
39823968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 628
Target Start/End: Complemental strand, 5617112 - 5616942
Alignment:
| Q |
458 |
ttgattaaaggagcaacttcgtggcgattagcaatagcatcgattaatgtaggaatctgcatgcaatgagttgaactcaaatcaactatatgaatcactg |
557 |
Q |
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||||||||||||| ||| ||||| |||| ||||| || ||||||| ||||||||||||||||||||| ||| ||||||||| || || ||||| |||| |
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| T |
5617112 |
ttgattaaaggaggaacctcgtgatgatttgcaatggcgtcgattagtgtaggaatctgcatgcaatgtgttaaactcaaattgacaatgtgaataactg |
5617013 |
T |
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| Q |
558 |
agaaaccttctgttgcttccagaattgctgcattagcggctgcgtacccaaatcgatgccaaggtgttaaa |
628 |
Q |
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| T |
5617012 |
taaatcctttagtagcttctagaattgcagaattagctgctgtgtaaccaaaacgatgccaaggcgttaaa |
5616942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 5617301 - 5617162
Alignment:
| Q |
278 |
tgttcaatcaaagaagcaaaaccatttgtgtaacttgaagaaactactctgaattccaatgtcacgtttcttgacctagcaaaattcaccaacttagaac |
377 |
Q |
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| T |
5617301 |
tgttcaatcaatgaagcgaatccatctgaataagttgaagaaacagctttgaattccataatcacgtttcttgttttagcaaaattaaccaattttgaac |
5617202 |
T |
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| Q |
378 |
ctaattcttcataagaaagatcaagttttggtggaattgg |
417 |
Q |
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| T |
5617201 |
ctaattcatcgtaagaaagatcaagcattggtggaattgg |
5617162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 628
Target Start/End: Complemental strand, 21162399 - 21162229
Alignment:
| Q |
458 |
ttgattaaaggagcaacttcgtggcgattagcaatagcatcgattaatgtaggaatctgcatgcaatgagttgaactcaaatcaactatatgaatcactg |
557 |
Q |
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| T |
21162399 |
ttgattaaaggaggaacctcgtgatgatttgcaatggcgtcgattagtgtaggaatctgcatgcaatgtgttaaactcaaattgacaatgtgaataactg |
21162300 |
T |
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| Q |
558 |
agaaaccttctgttgcttccagaattgctgcattagcggctgcgtacccaaatcgatgccaaggtgttaaa |
628 |
Q |
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| T |
21162299 |
taaatcctttagtagcttctagaattgcagaattagctgctgtgtaaccaaaacgatgccaaggcgttaaa |
21162229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 417
Target Start/End: Complemental strand, 21162588 - 21162449
Alignment:
| Q |
278 |
tgttcaatcaaagaagcaaaaccatttgtgtaacttgaagaaactactctgaattccaatgtcacgtttcttgacctagcaaaattcaccaacttagaac |
377 |
Q |
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| T |
21162588 |
tgttcaatcaatgaagcgaatccatctgaataagttgaagaaacagctttgaattccataatcacgtttcttgttttagcaaaattaaccaattttgaac |
21162489 |
T |
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| Q |
378 |
ctaattcttcataagaaagatcaagttttggtggaattgg |
417 |
Q |
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| T |
21162488 |
ctaattcatcgtaagaaagatcaagcattggtggaattgg |
21162449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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