View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5606_high_12 (Length: 252)
Name: NF5606_high_12
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 10339949 - 10340031
Alignment:
| Q |
22 |
attcttcctagtttgttttccatcttctatctatcacaattattcgttacataaatctttcatccctttatcaccatctattt |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10339949 |
attctttctagtttgttttccatcttctatctatcataattattcattacataaatctttcatctctttatcaccatctattt |
10340031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 10340106 - 10340168
Alignment:
| Q |
178 |
gaagtcccaaattttaaaaatttccttaagatttttaaacctaattgtcaaattagaaaattg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
10340106 |
gaagtcccaaattttaaaaatttccttaagactttttaacctaattgtcaaattagaaaattg |
10340168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University