View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_high_15 (Length: 216)
Name: NF5606_high_15
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_high_15 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 216
Target Start/End: Complemental strand, 4236867 - 4236654
Alignment:
| Q |
3 |
aggaggagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
102 |
Q |
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| T |
4236867 |
aggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
4236768 |
T |
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| Q |
103 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
202 |
Q |
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| T |
4236767 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
4236668 |
T |
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| Q |
203 |
tggtggtaaaagac |
216 |
Q |
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| T |
4236667 |
tggtggtaaaagac |
4236654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 6185960 - 6185748
Alignment:
| Q |
3 |
aggaggagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
102 |
Q |
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||||| ||| |||||||||||||||||||| |||| |||| ||||| ||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| |
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| T |
6185960 |
aggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagc |
6185861 |
T |
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| Q |
103 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
202 |
Q |
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| T |
6185860 |
attattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaaga |
6185761 |
T |
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| Q |
203 |
tggtggtaaaaga |
215 |
Q |
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| T |
6185760 |
tggtggtaaaaga |
6185748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 21847718 - 21847622
Alignment:
| Q |
3 |
aggaggagcagagatggtactaagaatgtgctcaaaataccatgatcgttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaa |
99 |
Q |
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||||| |||||||||||||||||||||||| |||| ||| | | | | |||||||| ||||||||||||||||| | | ||||||||||||||| |
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| T |
21847718 |
aggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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