View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_high_4 (Length: 454)
Name: NF5606_high_4
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 4494184 - 4493837
Alignment:
| Q |
19 |
agtattctggtcttccctataaattttaccctctcaatgaatcttatgatacaattctgtttaaagtcatggataaggtaaacttgacattatgttcttg |
118 |
Q |
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| T |
4494184 |
agtattctggtcttccctataaattttaccctctcaatgaatcttatgatacaattctgtttaaagtcatggataaggtaaacttgacattatgttctta |
4494085 |
T |
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| Q |
119 |
tcaacatggtttttgtttcatgatttcatatgtctctttcaatatatgcatttcacacacaaatggcataacataacattgcatgtatatcaaatataat |
218 |
Q |
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| T |
4494084 |
tcaacatggtttt-gtttcatgatttcatatgtctctttcaatatatgcatttcacacacaaatggcataacataacattgcatgtatatcaaatataat |
4493986 |
T |
|
| Q |
219 |
tttttctcaaaactaagagcatgttgggattgacagtgagtttgatggtatcacggcatgcaacgtgattttgcaaaagctacattttgaagcttaaaca |
318 |
Q |
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| T |
4493985 |
tttttctcaaaactaagagcatgttgggattgacagtgagtttgatggtatcacggcatgcagcgtgattttgcaaaacctacattttgaagcttaaaca |
4493886 |
T |
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| Q |
319 |
aaatcagaatgtcactgtatcaaattcactgtgattccaaacatgcact |
367 |
Q |
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| T |
4493885 |
aaatcagaatgtcactgtatcaaattcactgtgattccaaacatgcact |
4493837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 17 - 367
Target Start/End: Complemental strand, 4499736 - 4499382
Alignment:
| Q |
17 |
caagtattctggtcttccctataaattttaccctctcaatgaatcttatgatacaattctgtttaaagtcatggataaggtaaacttgacattatgttct |
116 |
Q |
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| T |
4499736 |
caagtattctggtctgcactataaattttaccctttaaatggatcttatgatacaatattgtttaaagtcatggatgaggtaaactcaacattatgttct |
4499637 |
T |
|
| Q |
117 |
tgtcaacatggtttttgtttcatgatttcatatgtctctttcaatatatgcatttcacacacaaatggcataaca----taacattgcatgtatatcaaa |
212 |
Q |
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| T |
4499636 |
tgtcaacttttttttttcttcatgaatttatttgtctctttcaatatttgcatttcacacacaaatggcataacataattaacattgcatgtatatcaaa |
4499537 |
T |
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| Q |
213 |
tataattttttctcaaaactaagagcatgttgggattgacagtgagtttgatggtatcacggcatgcaacgtgatttt-gcaaaagctacattttgaagc |
311 |
Q |
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| T |
4499536 |
tataa-tttttctcaaaacttagtgaatgttgggattgatggtgagtttcccggaatcatggcatgcgacgtgattttggcaaaagctacattttgaagc |
4499438 |
T |
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| Q |
312 |
ttaaacaaaatcagaatgtcactgtatcaaattcactgtgattccaaacatgcact |
367 |
Q |
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| T |
4499437 |
ttaaaccaaatcacaatgtcaccgtatcaaattcaccgtgattccgaacatgcact |
4499382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 128 - 367
Target Start/End: Complemental strand, 4506891 - 4506658
Alignment:
| Q |
128 |
tttttgtttcatgatttcatatgtctctttcaatatatgcatttcacacacaaatggcataacataacattgcatgtatatcaaatataattttttctca |
227 |
Q |
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|||||||||||||||||||| |||| |||||| |||||||||||||| ||||||| || |||| ||||||| || |||||| | ||||||| |
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| T |
4506891 |
tttttgtttcatgatttcatttgtcattttcaacatatgcatttcacatacaaatgtcacaacacaacattgtgtggatatcatac-------tttctca |
4506799 |
T |
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| Q |
228 |
aaactaagagcatgttgggattgacagtgagtttgatggtatcacggcatgcaac-gtgattttg-caaaagctacattttgaagcttaaacaaaatcag |
325 |
Q |
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| T |
4506798 |
acacaaagtgcatgtttggattgacggtgaatttgacataatcacggcatgccactgtgattttggcagaaactacactttgaagcttaaacaaaatcag |
4506699 |
T |
|
| Q |
326 |
aatgtcactgtatcaaattcactgtgattccaaacatgcact |
367 |
Q |
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| |||||| || |||||||||| |||||||||||||| |||| |
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| T |
4506698 |
agtgtcac-gtgtcaaattcaccgtgattccaaacattcact |
4506658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 444
Target Start/End: Complemental strand, 4493789 - 4493760
Alignment:
| Q |
415 |
gtaggaagctaatactattgcagacctatg |
444 |
Q |
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| T |
4493789 |
gtaggaagctaatactattgcagacctatg |
4493760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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