View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_high_6 (Length: 381)
Name: NF5606_high_6
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 32726291 - 32725943
Alignment:
| Q |
13 |
catcaccacaacaacaacaaacattacctcaccacaaatggtccccgcgacaaccaaaacgacacacttgctgctttccaactacttcaagacatgtcac |
112 |
Q |
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| T |
32726291 |
catcaccacaacaacaacaaacattacctcaccacaaatggtccccacgacaaccaaaacgacacacttgctgctttccaactacttcaagacatgtcac |
32726192 |
T |
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| Q |
113 |
cttacgtcaaattcggccacttcacagccaatcaagccatcatcgaagccgtggcccacgaacgccgcgtccatgtcatcgactacgatatcatggaagg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726191 |
cttacgtcaaattcggccacttcacagccaatcaagccatcatcgaagccgtggcccacgaacgccgcgtccatgtcatcgactacgatatcatggaagg |
32726092 |
T |
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| Q |
213 |
ggtccaatgggcctcattaatccaatcacttgcttccaacaacaacggtccacatcttcggataaccgcattatcgcggacaggaaccggccggaggtca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32726091 |
ggtccaatgggcctcattaatccaatcacttgcttccaacaacaacggtccacatcttcggataaccgcattatcgcggacaggaaccggccggaggtca |
32725992 |
T |
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| Q |
313 |
atcgccaccgtacaagaaaccggcaggcgattaacctcctttgccgctt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32725991 |
atcgccaccgtacaagaaaccggcaggcgattaacctcctttgccgctt |
32725943 |
T |
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