View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_high_9 (Length: 288)
Name: NF5606_high_9
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 25328074 - 25328336
Alignment:
| Q |
13 |
aatattatacaaatataagtttattatctatagttttcgaagacattatttcgtgtaaatcatttcattaaaatcatatgctttttaaaaacctactcnn |
112 |
Q |
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| T |
25328074 |
aatattatacaaatataagtttattatctgtagttttcgaagacattatttcgtgttaatcatttcatcaaaatcatatgctttttaaaaacctactttt |
25328173 |
T |
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| Q |
113 |
nnnnnnn---aagaaatcaaaatgggatattaacaacggcgatgaaaattcctcag--tataagatgtaaaaatttactttaaataagatgagttccttc |
207 |
Q |
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| T |
25328174 |
ttttttttttaagaaatcaaaataggatattaacaacggcgatgaaaattcctcagagtacaagatgtaaaaatctactttaaataagatgagttccttc |
25328273 |
T |
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| Q |
208 |
ttcctctttttcacatcatcaaccacttcattagccattaaaatttcatctagtatttgtctc |
270 |
Q |
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| T |
25328274 |
ttcctcttttttacatcatccaccacttcattggccattaaaattttatctagtatttatctc |
25328336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 18443590 - 18443532
Alignment:
| Q |
120 |
aagaaatcaaaatgggatat--taacaacggcgatgaaaattcctcagtataagatgta |
176 |
Q |
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| T |
18443590 |
aagaaatcaaaatggtatatattcacagcggcgatgaaaattcctcagtacaagatgta |
18443532 |
T |
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