View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_low_10 (Length: 328)
Name: NF5606_low_10
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 39765009 - 39765320
Alignment:
| Q |
1 |
aggaaataaaagagtgcaacaaaaagtggatgaatacggagcggagaaacatgcatcccataccacccccaacatataatagtttgtgaaaagaaccaaa |
100 |
Q |
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| T |
39765009 |
aggaaataaaagagtgcaacaaaaagtggatgaatacggagtggagaaacatgcatcccataccacccccaacatataatagtttgtgaaaagaaccaaa |
39765108 |
T |
|
| Q |
101 |
actatgtcaataaaacagtatagacaaattaagaaaagttttnnnnnnnctattagtgctgcatatatcaataaaatacaacatttttccgcctagctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39765109 |
actatgtcaataaaacagtatagacaaattaagaaaagttttaaaaaa-ctattagtgctgcatatatcaataaaatacaacatttttccgcctagctta |
39765207 |
T |
|
| Q |
201 |
gaactctaataaacgtgtttagcttagaacaattctagaatgagtgacagcaattgacctttgtcaatctatctagctggtgcattgtgagatataaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39765208 |
gaactctaataaacgtgtttagcttagaacaattctagaatgagtgacagcaattgacctttgtcaatctatctagctggtgcattgtgagatataaaat |
39765307 |
T |
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| Q |
301 |
agaactttgattt |
313 |
Q |
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||||||||||||| |
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| T |
39765308 |
agaactttgattt |
39765320 |
T |
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