View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_low_12 (Length: 312)
Name: NF5606_low_12
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_low_12 |
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| [»] scaffold0085 (2 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 65 - 312
Target Start/End: Complemental strand, 45949 - 45702
Alignment:
| Q |
65 |
tatatcattgattattatgatttgttaattacatttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagt |
164 |
Q |
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| T |
45949 |
tatatcattgattattatgatttgttaattacatttatagcatcctttagagcaccaaaacttctaatgaagtcatgtctggtatttgacatctgttagt |
45850 |
T |
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| Q |
165 |
gtctaacatcaacacaacactgacaggtataattacattttattatgctannnnnnnaaattattatcggtctcgatgtgtcactatgtgtcactgttgt |
264 |
Q |
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| T |
45849 |
gtctaacatcaacacaacactgacaggtataattacattttattatgctatttttttaaattattatcggtctcgatgtgtcactatgtgtcactgttgt |
45750 |
T |
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| Q |
265 |
gtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaac |
312 |
Q |
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| T |
45749 |
gtttggtgtctctgtgtcagtgcttcatagatattatttgaatgaaac |
45702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 46061 - 46007
Alignment:
| Q |
41 |
gcatttcatcttcatagtttaacttatatcattgattattatgatttgttaatta |
95 |
Q |
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| T |
46061 |
gcatttcatcttcatagtttaacttatatcattgattattatgatttgttaatta |
46007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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