View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5606_low_19 (Length: 233)

Name: NF5606_low_19
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5606_low_19
NF5606_low_19
[»] chr4 (5 HSPs)
chr4 (1-217)||(42266421-42266637)
chr4 (1-216)||(30949767-30949982)
chr4 (1-217)||(48701404-48701620)
chr4 (23-214)||(1999454-1999645)
chr4 (5-181)||(21514658-21514834)
[»] chr5 (3 HSPs)
chr5 (14-216)||(34352544-34352746)
chr5 (1-217)||(41718928-41719144)
chr5 (52-207)||(23318861-23319016)
[»] chr6 (4 HSPs)
chr6 (1-217)||(27878292-27878508)
chr6 (1-215)||(30967927-30968141)
chr6 (23-181)||(8480425-8480583)
chr6 (5-78)||(23012232-23012305)
[»] chr3 (5 HSPs)
chr3 (1-217)||(5822858-5823074)
chr3 (1-216)||(2816847-2817062)
chr3 (23-214)||(42585497-42585688)
chr3 (88-182)||(25877438-25877532)
chr3 (100-161)||(47277426-47277487)
[»] chr8 (2 HSPs)
chr8 (1-217)||(9443675-9443891)
chr8 (23-214)||(24598068-24598259)
[»] chr2 (2 HSPs)
chr2 (1-217)||(825997-826213)
chr2 (1-193)||(13843405-13843597)
[»] chr7 (2 HSPs)
chr7 (1-216)||(8138042-8138258)
chr7 (5-195)||(25441283-25441477)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 42266421 - 42266637
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
T  42266421 caacgggagaaatttttccctatggaaattgaagataagggcaattttaagaaaagataattgcctagacgcaatagatggcagacctgcagatatcact 42266520  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  42266521 gatgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 42266620  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  42266621 aggagatctgggataca 42266637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 30949982 - 30949767
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
T  30949982 caacgggagaaaattttccctatggaaattgaagataagggcaattttaagaaaagataattgcctagacgcaatagatggcagacctgcagatatcact 30949883  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  30949882 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaaaaagacagcaa 30949783  T
Q  201 aggagatttgggatac 216  Q
    ||||||| ||||||||    
T  30949782 aggagatctgggatac 30949767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 48701620 - 48701404
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||| ||    
T  48701620 caacgggagaaatttttccctatggaaattgaagataagggcaattttaagaaaagataattgtctagacgcaatagatggcagacctgcagatatcact 48701521  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  48701520 gatgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 48701421  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  48701420 aggagatctgggataca 48701404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 1999454 - 1999645
Alignment:
Q  23 tggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacgaaaagtgcaaagagatgg 122  Q
    |||||||| |||||||||||  || | |||||||| ||||||||||  ||||| || |||||||||||| ||||| ||||  ||||||| ||||||||||    
T  1999454 tggaaattaaagataagggcggttctaagaaaagacaattgcctagatgcaattgatggcagacctgcaaatatcactgatcaaaagtggaaagagatgg 1999553  T
Q  123 atgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaaaggagatttgggat 214  Q
    |||| || |  ||| ||||||||||| ||||||||||| | |||||||||||||||||| | || || ||| | ||||||||||| ||||||    
T  1999554 atgacaacgctgttaccaatttgcacttagcaatggcaaattcggtattgtcaagtattccagagaaaaagtctgcaaaggagatatgggat 1999645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 21514834 - 21514658
Alignment:
Q  5 gggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacg 104  Q
    |||||||| |||||| | ||||||||| |||||||||||||||| |||||| |||||||||||  ||  ||| |||||| || ||  ||||   |||| |    
T  21514834 gggagaaatttttccttgtggaaattgtagataagggcaattttgagaaaaaataattgcctaaacgtgataaaaggcaaacttgtggatacgactgatg 21514735  T
Q  105 aaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtatt 181  Q
    ||||||| ||||| |  || || ||||| ||||| ||||||||||| |||||||  || ||  ||||||||||||||    
T  21514734 aaaagtggaaagaaaatgaagacaatgttgttgcaaatttgcaccttgcaatggtggattcaatattgtcaagtatt 21514658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 34352544 - 34352746
Alignment:
Q  14 ttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacgaaaagtgca 113  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||| |    
T  34352544 ttttccctatggaaattgaagataagggcaattttaagaaaagataattgcttagacgcaatagatggcagacctgcagatatcactgacgaaaagtgga 34352643  T
Q  114 aagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaaaggagatttggga 213  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352644 aagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacggcaaaggagatttggga 34352743  T
Q  214 tac 216  Q
    |||    
T  34352744 tac 34352746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41718928 - 41719144
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||| ||    
T  41718928 caacgggagaaatttttccctatggaaattgaagataagggcaattttaagaaaagataattgtctagacgcaatagatggcagacctgcagatatcact 41719027  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  41719028 gatgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 41719127  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  41719128 aggagatctgggataca 41719144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 23318861 - 23319016
Alignment:
Q  52 aaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcaccta 151  Q
    |||||| |||||| ||| |||||| || ||   ||||||||||||| | ||  ||||||| |||||||||||||| || |  ||||||||||| ||| ||    
T  23318861 aaaagaaaattgcgtagacgcaattgatggtgaacctgcagatatcaccgatcaaaagtggaaagagatggatgacaacgatgttgccaattttcactta 23318960  T
Q  152 gcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaaaggagat 207  Q
    |||||| || |||||||||||||||||||||| || || ||| | |||||||||||    
T  23318961 gcaatgacaaactcggtattgtcaagtattgcagagaaaaagtctgcaaaggagat 23319016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 27878508 - 27878292
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||| ||    
T  27878508 caacgggagaaatttttccctatggaaattgaagataagggcaattttaagaaaagataattgtctagacgcaatagatggcagacctgcagatatcact 27878409  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  27878408 gatgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 27878309  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  27878308 aggagatctgggataca 27878292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30967927 - 30968141
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||||| ||    
T  30967927 caacgggagaaatttttccctgtggaaattgaagataagggcaattttaagaaaagataattgcctagacacaatagatggcagacctgcagatatcact 30968026  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    |  |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||    
T  30968027 gttgaaaagcggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacattaa 30968126  T
Q  201 aggagatttgggata 215  Q
    ||||||| |||||||    
T  30968127 aggagatctgggata 30968141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 181
Target Start/End: Complemental strand, 8480583 - 8480425
Alignment:
Q  23 tggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacgaaaagtgcaaagagatgg 122  Q
    |||||||| ||||||||||| ||| | |||||||||||||||||||  |||||  | || |||  |||| ||||| ||||  ||||||| ||| ||||||    
T  8480583 tggaaattaaagataagggcgattctaagaaaagataattgcctagatgcaatttatggtagatatgcaaatatcactgattaaaagtggaaaaagatgg 8480484  T
Q  123 atgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtatt 181  Q
    |||| || ||  || ||||||||||| ||||||| |||||||||||||| |||||||||    
T  8480483 atgacaacgttttttccaatttgcacttagcaattgcagactcggtattttcaagtatt 8480425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 23012305 - 23012232
Alignment:
Q  5 gggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaataga 78  Q
    |||||||| |||||||||||||||||||| |||| ||||||||| | ||||||||||| ||||  |||||||||    
T  23012305 gggagaaatttttccctatggaaattgaatataatggcaattttgataaaagataatttcctaaacgcaataga 23012232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5823074 - 5822858
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||| ||    
T  5823074 caacgggagaaatttttccctatggaaattgaagataagggcaattttaagaaaagataattgtctagacgcaatagatggcagacctgcagatatcact 5822975  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  5822974 gatgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 5822875  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  5822874 aggagatctgggataca 5822858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2817062 - 2816847
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
T  2817062 caacgggagaaatttttccttttggaaattgaagataagggcaattttaagaaaagataattgcctagacgcaatagatggcagacctgcagatatcact 2816963  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||  ||||  ||||||||||||||||||||||  ||||||||||| ||||    
T  2816962 gacgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagatatggtggactcggtattgtcaagtattgaagaaaagaagacagcaa 2816863  T
Q  201 aggagatttgggatac 216  Q
    ||||||| ||||||||    
T  2816862 aggagatctgggatac 2816847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 42585497 - 42585688
Alignment:
Q  23 tggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacgaaaagtgcaaagagatgg 122  Q
    |||||||| |||||||||||| || | |||||||| ||||||||||  ||||| || |||||||||||||||||| ||||  ||||||| ||||||||||    
T  42585497 tggaaattaaagataagggcagttctaagaaaagacaattgcctagatgcaattgatggcagacctgcagatatcactgatcaaaagtggaaagagatgg 42585596  T
Q  123 atgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaaaggagatttgggat 214  Q
    |||| || || ||||||||||||||| ||||||||||||| |||||||| ||||||||||| || || ||| | ||||||||||| ||||||    
T  42585597 atgacaacgttgttgccaatttgcacttagcaatggcagattcggtattatcaagtattgcagagaaaaagtctgcaaaggagatctgggat 42585688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 25877438 - 25877532
Alignment:
Q  88 tgcagatatcgctgacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattg 182  Q
    |||| ||||| ||||  ||||||| |||||||||||||| |||||  |||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  25877438 tgcaaatatcactgatcaaaagtgaaaagagatggatgacaatgttattgccaatttgcacttagtaatggcagactcgatattgtcaagtattg 25877532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 47277487 - 47277426
Alignment:
Q  100 tgacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcag 161  Q
    ||||||||| || |||||||| ||||||| | | ||||||||||||||||||||||||||||    
T  47277487 tgacgaaaaatggaaagagatagatgatattattgttgccaatttgcacctagcaatggcag 47277426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 9443891 - 9443675
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||| |||||||| ||    
T  9443891 caacgggagaaatttttccctatggaaattgaagataagggcaattttaagaaaagataattgtctagacgcaatagatggcagacctacagatatcact 9443792  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  9443791 gatgaaaagtggaaagagatggatgataatgccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 9443692  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  9443691 aggagatctgggataca 9443675  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 24598259 - 24598068
Alignment:
Q  23 tggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacgaaaagtgcaaagagatgg 122  Q
    |||||||| ||||||||||| ||| | |||||||| ||||||||||  ||||| || |||||||||||||||||| | ||  ||||||| ||||||||||    
T  24598259 tggaaattaaagataagggcgattctaagaaaagacaattgcctagatgcaattgatggcagacctgcagatatcaccgatcaaaagtggaaagagatgg 24598160  T
Q  123 atgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaaaggagatttgggat 214  Q
    |||| || |  ||||||||||||||| ||||||||||||| |||||||||||||||||||| || || ||| | ||||||||||| ||||||    
T  24598159 atgacaacgctgttgccaatttgcacttagcaatggcagattcggtattgtcaagtattgcagagaaaaagtctgcaaaggagatctgggat 24598068  T

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Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 825997 - 826213
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| ||    
T  825997 caacgggagaaatttttcgctatggaaattgaagataagggcaattttaagaaaagataattgcctagacgcaatagatggcagacctgcagatatcact 826096  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggcaa 200  Q
    || |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  826097 gatgaaaagtggaaagagatggatgataattccgttgccaatttgcacctagcaatggcggactcggtattgtcaagtattgctgaaaagaagacagcaa 826196  T
Q  201 aggagatttgggataca 217  Q
    ||||||| |||||||||    
T  826197 aggagatctgggataca 826213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 13843597 - 13843405
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgct 100  Q
    |||| ||||||| | |||||| |||||||||||||||   |||||||| ||||||||||||||  ||| | |||| || |||| || |||| ||||| ||    
T  13843597 caacaggagaaattcttccctttggaaattgaagatacaagcaattttaagaaaagataattgtgtagacacaattgatggcaaacttgcaaatatcact 13843498  T
Q  101 gacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaag 193  Q
    ||||||||||  |||||||| |||||||| || ||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||||||    
T  13843497 gacgaaaagtaaaaagagatagatgataacgttgttgccaatttgcaccttgcaatggtagactcgatattgtcaagtattgttgaaaagaag 13843405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8138258 - 8138042
Alignment:
Q  1 caacgggagaaagttttccctatggaaattgaagataagggcaattttcagaaaaga-taattgcctagccgcaatagaaggcagacctgcagatatcgc 99  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||| |||||| | ||||||| ||| ||||||||| |||||||||||||||||| |    
T  8138258 caacgagagaaatttttccctattgaaattgaagataagggcaattttaagaaaaaaataattgcatagacgcaatagatggcagacctgcagatatcac 8138159  T
Q  100 tgacgaaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctagcaatggcagactcggtattgtcaagtattgctgaaaagaagacggca 199  Q
    | || ||||||| ||| ||||||| |||||||| ||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  8138158 taacaaaaagtggaaaaagatggaagataatgttgttgccaacctgcacctagcaatggcagactgggtattgtcaagtattgctgaaaagaagacaaca 8138059  T
Q  200 aaggagatttgggatac 216  Q
    || |||||  |||||||    
T  8138058 aacgagatcggggatac 8138042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 5 - 195
Target Start/End: Original strand, 25441283 - 25441477
Alignment:
Q  5 gggagaaagttttccctatggaaattgaagataagggcaattttcagaaaagataattgcctagccgcaatagaaggcagacctgcagatatcgctgacg 104  Q
    |||||||| |||| ||||||||||||||||||||||| |||||| ||| |||||||||||||||  || ||||| | |||||||||||||||| ||||||    
T  25441283 gggagaaattttttcctatggaaattgaagataagggaaattttaagagaagataattgcctagatgcgatagatgtcagacctgcagatatcactgacg 25441382  T
Q  105 aaaagtgcaaagagatggatgataatgtcgttgccaatttgcacctag----caatggcagactcggtattgtcaagtattgctgaaaagaagac 195  Q
     |||||| ||||||||||||||||||||||| |||||||||||| | |    ||||| | ||||| |||||||||||||||||||||||||||||    
T  25441383 gaaagtggaaagagatggatgataatgtcgtcgccaatttgcacatcgacgccaatgacggactcagtattgtcaagtattgctgaaaagaagac 25441477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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