View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_low_2 (Length: 617)
Name: NF5606_low_2
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 13 - 599
Target Start/End: Complemental strand, 2386788 - 2386202
Alignment:
| Q |
13 |
aatatcataggtccattgccagattttgctgtttggaagaatttatctgttgttaatttgtctaataaccgtttcattggtgaaattcctttatctcttt |
112 |
Q |
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| T |
2386788 |
aatatcataggtccattgccagattttgctgtttggaagaatttatctgttgttaatttgtctaataaccgtttcattggtgaaattcctttatctcttt |
2386689 |
T |
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| Q |
113 |
ccaatttgagtcaccttgtttatttgaatctcgcaaacaactcgctttccggtgaaattcctgatataagcttgccattgttgaaacaattgaatttggc |
212 |
Q |
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| T |
2386688 |
ccaatttgagtcaccttgtttatttgaatctcgcaaacaactcgctttccggtgaaattcctgatataagcttgccattgttgaaacagttgaatttggc |
2386589 |
T |
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| Q |
213 |
taacaacaatttgcaaggggttgttcctgtttcttttcagaggtttcctaagtcagcatttgttggaaacaatgtttctattggtacattgtctccggta |
312 |
Q |
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| T |
2386588 |
taacaacaatttgcaaggggttgttcctgtttcttttcagaggtttcctaagtcagcatttgttggaaacaatgtttctattggtacattgtctccggta |
2386489 |
T |
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| Q |
313 |
actctaccttgttccaaacattgttctaaatctgagaaacatggaaggattggtggaacagtaatgttgggtattattgttgttggtagttttctatgcc |
412 |
Q |
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| T |
2386488 |
actctaccttgttccaaacattgttctaaatctgagaaacatggaaggattggtggaacagtaatgttgggtattattgttgttggtagttttctatgcc |
2386389 |
T |
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| Q |
413 |
ttgcagcattcattgtttttatctttgtgttgtgttctaaaaagaagaatggagatgtttttgttggcaagttggagaaaggaggaaaaatgtctcctga |
512 |
Q |
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| T |
2386388 |
ttgcagcattcattgtttttatctttgtgttgtgttctaaaaagaagaatggagatgtttttgttggcaagttggagaaaggaggaaaaatgtctcctga |
2386289 |
T |
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| Q |
513 |
aaaagtggtctcaagaaaccaagatgcaaataataagcnnnnnnnctttgagggatgtaactatgcttttgatttggaggatttatt |
599 |
Q |
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| T |
2386288 |
aaaagtggtctcaagaaaccaagatgcaaataataagctttttttctttgagggatgtaactatgcttttgatttggaggatttatt |
2386202 |
T |
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