View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_low_3 (Length: 467)
Name: NF5606_low_3
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 24 - 456
Target Start/End: Original strand, 4236236 - 4236677
Alignment:
| Q |
24 |
gccatcacagatattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgtttcatctgtgtcctgatttg |
123 |
Q |
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| T |
4236236 |
gccatcacagagattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgtttcatccgtgtcctgattag |
4236335 |
T |
|
| Q |
124 |
gttgaagaattccgcattcaaatgctatagcttttgcagtgaaaacattatcacctgtcatcagagataaagttagttaatagtcaattaagaattagtt |
223 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |||||| || ||||| |
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| T |
4236336 |
gttgaagaattccacattcaaatgctatagcttttgcagtgaaaacattgtcacctgtcatcagagataaagtatgttaatggttaattaacaactagtt |
4236435 |
T |
|
| Q |
224 |
a---------ttcttattatcttcttcgtattcatatagactcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttag |
314 |
Q |
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| T |
4236436 |
aggttaactattcttattatattcatcatttccatataggctcgtatgtataaatagagaattttatattatcaagttatcgataaataagatattttag |
4236535 |
T |
|
| Q |
315 |
taatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatccttaatgcctacaagtcc |
414 |
Q |
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| T |
4236536 |
taatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgtcgtcttcacccccgggcgacatggatccttaatgcctacaagtcc |
4236635 |
T |
|
| Q |
415 |
taacaatgttaaaccattgtcttttaccaccatcttgttcat |
456 |
Q |
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| T |
4236636 |
taacaatgttaaaccattgtcttttaccaccatcttgttcat |
4236677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 37067926 - 37067887
Alignment:
| Q |
285 |
atcaagttatcgataaataagatattttagtaatacctgt |
324 |
Q |
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| T |
37067926 |
atcaagttatcaataaatgagatattttagtaatacctgt |
37067887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 324
Target Start/End: Complemental strand, 37060449 - 37060411
Alignment:
| Q |
286 |
tcaagttatcgataaataagatattttagtaatacctgt |
324 |
Q |
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|||||||||| |||||| ||||||||||||||||||||| |
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| T |
37060449 |
tcaagttatcaataaatgagatattttagtaatacctgt |
37060411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 297 - 451
Target Start/End: Original strand, 6185611 - 6185765
Alignment:
| Q |
297 |
ataaataagatattttagtaatacctgtaatcattttgacattcacaccagcatgttggcaagcttccactgccgtcttcacccccgggcgacatggatc |
396 |
Q |
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| T |
6185611 |
ataaatgagatattatagtaatacctgtaatcattttgacattcacaccggcatgttggcaagcttccaccgctgtcttcacccctgggcgacatggatc |
6185710 |
T |
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| Q |
397 |
cttaatgcctacaagtcctaacaatgttaaaccattgtcttttaccaccatcttg |
451 |
Q |
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| T |
6185711 |
cttaatgccgacaagtcctaacaatgttaaatcattctcttttaccaccatcttg |
6185765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 6185360 - 6185515
Alignment:
| Q |
24 |
gccatcacagatattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcaccttcaaccactgtttcatctgtgtcctgatttg |
123 |
Q |
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||||||||| ||||||| ||||| || | || ||||||||||| || ||||| ||||||||||| ||||||||||| ||||||||| |||||||||| | |
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| T |
6185360 |
gccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgtttcatctatgtcctgattag |
6185459 |
T |
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| Q |
124 |
gttgaagaattccgcattcaaatgctatagcttttgcagtgaaaacattatcacct |
179 |
Q |
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| T |
6185460 |
gttgaagaattccacattcaaatgctatagctttcgcagtgaaaacattgtcacct |
6185515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 402298 - 402337
Alignment:
| Q |
285 |
atcaagttatcgataaataagatattttagtaatacctgt |
324 |
Q |
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| T |
402298 |
atcaagttatcgataaatgagatattttagtaatacctgt |
402337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 45369992 - 45369930
Alignment:
| Q |
211 |
ttaagaattagttattcttattatcttcttcgtattcatatagactcgtatgtataaatagag |
273 |
Q |
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| T |
45369992 |
ttaagaattagttatccttgttatccttttcattttcatatggactcatatgtataaatagag |
45369930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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