View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5606_low_4 (Length: 462)

Name: NF5606_low_4
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5606_low_4
NF5606_low_4
[»] chr8 (13 HSPs)
chr8 (1-130)||(10340181-10340310)
chr8 (31-130)||(559945-560044)
chr8 (31-128)||(34273126-34273223)
chr8 (31-130)||(8238742-8238841)
chr8 (59-130)||(38924418-38924489)
chr8 (5-129)||(37616293-37616415)
chr8 (56-120)||(32729431-32729495)
chr8 (140-178)||(10340303-10340341)
chr8 (60-130)||(29204624-29204694)
chr8 (34-94)||(9030583-9030643)
chr8 (68-113)||(30370054-30370099)
chr8 (31-75)||(21150241-21150285)
chr8 (136-184)||(32049124-32049171)
[»] chr4 (12 HSPs)
chr4 (1-123)||(43115554-43115675)
chr4 (11-127)||(37761762-37761877)
chr4 (56-124)||(79515-79583)
chr4 (24-130)||(24673011-24673117)
chr4 (10-130)||(40423308-40423427)
chr4 (31-132)||(24672709-24672810)
chr4 (53-130)||(11548151-11548228)
chr4 (31-119)||(9954511-9954599)
chr4 (30-130)||(37397945-37398045)
chr4 (57-111)||(3741710-3741764)
chr4 (38-91)||(40421947-40422000)
chr4 (142-178)||(54026949-54026985)
[»] chr7 (12 HSPs)
chr7 (7-130)||(101284-101406)
chr7 (41-130)||(25690718-25690807)
chr7 (10-114)||(16780773-16780876)
chr7 (10-126)||(31726640-31726755)
chr7 (56-128)||(35851960-35852032)
chr7 (53-130)||(37108921-37108998)
chr7 (6-94)||(41432941-41433028)
chr7 (59-126)||(5815111-5815178)
chr7 (60-130)||(48078598-48078668)
chr7 (153-195)||(101236-101278)
chr7 (56-120)||(11754690-11754754)
chr7 (56-88)||(45773215-45773247)
[»] chr3 (11 HSPs)
chr3 (46-114)||(27177327-27177395)
chr3 (31-130)||(581048-581146)
chr3 (43-114)||(6588319-6588390)
chr3 (31-128)||(12767323-12767420)
chr3 (56-114)||(25258079-25258137)
chr3 (60-130)||(52205030-52205098)
chr3 (58-111)||(40413445-40413498)
chr3 (62-130)||(50670089-50670157)
chr3 (43-114)||(37058992-37059063)
chr3 (133-162)||(54788210-54788239)
chr3 (31-75)||(50670077-50670121)
[»] chr1 (11 HSPs)
chr1 (10-128)||(32191144-32191256)
chr1 (10-111)||(34062619-34062719)
chr1 (56-94)||(2930282-2930320)
chr1 (28-130)||(25484934-25485036)
chr1 (5-128)||(8041087-8041210)
chr1 (70-130)||(12082181-12082241)
chr1 (130-173)||(31847474-31847517)
chr1 (75-130)||(34123167-34123222)
chr1 (31-130)||(31847400-31847503)
chr1 (70-130)||(17916173-17916233)
chr1 (140-228)||(31847320-31847407)
[»] chr2 (12 HSPs)
chr2 (10-90)||(30481656-30481735)
chr2 (43-130)||(15404919-15405006)
chr2 (31-130)||(33710568-33710667)
chr2 (58-119)||(21488865-21488926)
chr2 (31-91)||(23465778-23465838)
chr2 (5-114)||(12670733-12670841)
chr2 (31-111)||(7152083-7152163)
chr2 (59-123)||(15538954-15539018)
chr2 (59-114)||(4422823-4422878)
chr2 (130-173)||(23465809-23465852)
chr2 (42-92)||(37172624-37172674)
chr2 (57-130)||(34557320-34557393)
[»] chr5 (9 HSPs)
chr5 (31-130)||(18398556-18398655)
chr5 (10-94)||(31536435-31536518)
chr5 (29-130)||(23311748-23311849)
chr5 (31-130)||(9962910-9963009)
chr5 (31-130)||(35895010-35895109)
chr5 (59-130)||(35943531-35943602)
chr5 (69-126)||(2978462-2978519)
chr5 (31-92)||(36289591-36289652)
chr5 (1-50)||(9962868-9962917)
[»] scaffold0018 (1 HSPs)
scaffold0018 (67-130)||(188135-188198)
[»] chr6 (2 HSPs)
chr6 (71-128)||(2608387-2608444)
chr6 (74-130)||(20694596-20694652)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 10340181 - 10340310
Alignment:
Q  1 atttagcgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| ||||| ||    
T  10340181 atttagcgggagttaactcatgttcaacattttttcagcgtgagttaactcacactgacactttttagatcgattcaatcattttttaagttgggtcggc 10340280  T
Q  101 cgattttaaaagtgccagcgtgagttaact 130  Q
    |||| ||||||||| |||||||||||||||    
T  10340281 cgatcttaaaagtgtcagcgtgagttaact 10340310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 559945 - 560044
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||||||||||||||| ||  ||||| |||| ||| || |||||| ||||||||||| || ||| |||||||||||| ||||||||||||||||||    
T  559945 tttttcagcgtgagttaactcacgctgacatttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagttaact 560044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 34273223 - 34273126
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaa 128  Q
    ||||||||| | |||||||| ||| |   |||||| ||||||||||||||| | |||||||||| ||| ||||||||||||||| |||||||||||||    
T  34273223 tttttcagcattagttaactcacactagtacttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaa 34273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 8238742 - 8238841
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||||  |||||||| ||  |||||||||||||||| ||||||||| ||||| |||||| ||| ||||| |||||||||| |  |||||||||||    
T  8238742 tttttcagcggtagttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtgctattgtgagttaact 8238841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 38924418 - 38924489
Alignment:
Q  59 cactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||| ||||||||||||||| |||||||||||| ||| | ||| ||||||||| |||||||||||||||    
T  38924418 cacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaact 38924489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 37616415 - 37616293
Alignment:
Q  5 agcgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgat 104  Q
    |||||||||||||||| | ||||||||||| |||||| |||||| | |||  |||| |||| | || ||||||||||| |||||||| || ||| || ||    
T  37616415 agcgggagttaactcacgctcaacattttt-cagcgtaagttaattaacac-gacatttttaatattggttcaatcatcttttaagttggatcaaccaat 37616318  T
Q  105 tttaaaagtgccagcgtgagttaac 129  Q
     ||||||||| ||||||||||||||    
T  37616317 cttaaaagtgtcagcgtgagttaac 37616293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 32729431 - 32729495
Alignment:
Q  56 tgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcg 120  Q
    |||||||||| ||||| ||||||| |||||||||||||| ||| ||||| ||||||||| |||||    
T  32729431 tgacacttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagtgtcagcg 32729495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 178
Target Start/End: Original strand, 10340303 - 10340341
Alignment:
Q  140 agttaactcacgttgaaaaatgccgagcatgagtcaact 178  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  10340303 agttaactcacgttgaaaaatgccaagcatgagtcaact 10340341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 29204624 - 29204694
Alignment:
Q  60 actttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||| | ||||||||||||| |||||||||||| ||| | ||| ||||||||| |||||| ||||||||    
T  29204624 acttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaact 29204694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 9030583 - 9030643
Alignment:
Q  34 ttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgg 94  Q
    ||||||||||||||||| |||  ||||||||| |||||| |||||||| ||||||| ||||    
T  9030583 ttcagcgtgagttaactcacaccgacacttttaagatcgattcaatcactttttaaatcgg 9030643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 30370099 - 30370054
Alignment:
Q  68 gatcggttcaatcattttttaagtcgggtcagccgattttaaaagt 113  Q
    |||||||||||||| ||||||||| || ||| ||||||||||||||    
T  30370099 gatcggttcaatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 21150285 - 21150241
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggtt 75  Q
    ||||||| |||||||||||||||  |||||||||| |||||||||    
T  21150285 tttttcaacgtgagttaacttacgctgacacttttaagatcggtt 21150241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 32049124 - 32049171
Alignment:
Q  136 cgtaagttaactcacgttgaaaaatgccgagcatgagtcaactctcgct 184  Q
    |||||||||||||||||||||||| ||| ||||||||| ||||| ||||    
T  32049124 cgtaagttaactcacgttgaaaaa-gccaagcatgagttaactcacgct 32049171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 43115554 - 43115675
Alignment:
Q  1 atttagcgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagc 100  Q
    |||||||| ||||||||| | |||| ||||||| |||||||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||| ||| |    
T  43115554 atttagcgtgagttaacttaagttcgacatttt-tcagcgtgagttaactcacactgacacttttaagatcggttcaataattttttaagtcggttcaac 43115652  T
Q  101 cgattttaaaagtgccagcgtga 123  Q
    | |  ||| ||||| ||||||||    
T  43115653 caaccttagaagtggcagcgtga 43115675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 37761762 - 37761877
Alignment:
Q  11 agttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaa 110  Q
    |||||||||| ||||||||||||| |||||  |||||||| ||||||||| |||||||||| ||||||||   |||||||| |||||| ||  | |||||    
T  37761762 agttaactcacgttcaacattttt-cagcggtagttaactcacattgacattttttagatcagttcaatcgcattttaagttgggtcaaccattcttaaa 37761860  T
Q  111 agtgccagcgtgagtta 127  Q
    |||| ||||||||||||    
T  37761861 agtgtcagcgtgagtta 37761877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 79583 - 79515
Alignment:
Q  56 tgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgag 124  Q
    |||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||| || ||||||    
T  79583 tgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 79515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 24673117 - 24673011
Alignment:
Q  24 tcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtga 123  Q
    ||||||||||||||||   |||||||| ||  ||   ||||||||||| ||||||||| |||||| ||||||||| || || |||||||||||| |||||    
T  24673117 tcaacattttttcagctgtagttaactcacgctggtgctttttagatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtga 24673018  T
Q  124 gttaact 130  Q
    |||||||    
T  24673017 gttaact 24673011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 40423427 - 40423308
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaa 109  Q
    ||||||||||| | ||| |||||||  ||||||| |||||| ||  ||||| |||| ||||||||||||||| |||||||||||| ||| |  || ||||    
T  40423427 gagttaactcacgctcagcattttta-agcgtgaattaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaa 40423329  T
Q  110 aagtgccagcgtgagttaact 130  Q
    ||||| |||| ||||||||||    
T  40423328 aagtgtcagcatgagttaact 40423308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 24672810 - 24672709
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||||  |||||||| || ||| |||| ||||||||| |||||||| |||||||||||| | | |||||   ||||||| || ||||||||||||    
T  24672810 tttttcagcggtagttaactcacgttggcactatttagatcgattcaatcactttttaagtcggataaaccgataaaaaaagtgtcaacgtgagttaact 24672711  T
Q  131 gt 132  Q
    ||    
T  24672710 gt 24672709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 11548228 - 11548151
Alignment:
Q  53 cattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||||||| ||||||||||| ||  |||||||||||| ||  ||||| ||||||||| |||||  ||||||||    
T  11548228 cattgacacttttaagatcggttcattcgctttttaagtcggttcgaccgatgttaaaagtgtcagcggcagttaact 11548151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 9954511 - 9954599
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagc 119  Q
    ||||||||||  |||||||| |   ||||||||||||||||  |||||| ||||||||||| ||||||  |||| ||||||||| ||||    
T  9954511 tttttcagcggtagttaactcaagctgacactttttagatcaattcaattattttttaagttgggtcaatcgatcttaaaagtgacagc 9954599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 37398045 - 37397945
Alignment:
Q  30 ttttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaac 129  Q
    ||||||||| ||||||||||| |   | ||| |||| ||||||||||||||| |||||||||| | ||| || || |||||  | |||||||||||||||    
T  37398045 ttttttcagagtgagttaactcaggctaacatttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaacattccagcgtgagttaac 37397946  T
Q  130 t 130  Q
    |    
T  37397945 t 37397945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 3741710 - 3741764
Alignment:
Q  57 gacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaa 111  Q
    ||||| ||| |||||||| |||||||||||||||| || ||| ||||||||||||    
T  3741710 gacacatttaagatcggtgcaatcattttttaagttggttcaaccgattttaaaa 3741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 40422000 - 40421947
Alignment:
Q  38 gcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagt 91  Q
    ||||||||||||| ||| |||||||||| ||||  ||||||||| |||||||||    
T  40422000 gcgtgagttaactcacactgacacttttaagattagttcaatcactttttaagt 40421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 54026985 - 54026949
Alignment:
Q  142 ttaactcacgttgaaaaatgccgagcatgagtcaact 178  Q
    |||||||||||||||||| | ||||||||||||||||    
T  54026985 ttaactcacgttgaaaaaagtcgagcatgagtcaact 54026949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 101406 - 101284
Alignment:
Q  7 cgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattt 106  Q
    |||||||||||||||| || |||||||| |||||  |||||||| |   |  ||||||||||||| ||||||||| |||||||||| ||||| ||||| |    
T  101406 cgggagttaactcatgctcgacattttt-cagcggtagttaactcatgctagcactttttagatcagttcaatcactttttaagtcaggtcaaccgatct 101308  T
Q  107 taaaagtgccagcgtgagttaact 130  Q
    |||||||| |||||||||||||||    
T  101307 taaaagtgtcagcgtgagttaact 101284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 25690718 - 25690807
Alignment:
Q  41 tgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||||| ||  |||||||||||||||||||||||||| |||||||| ||| ||| ||||| ||||||||| |||| ||| ||||||    
T  25690718 tgagttaactcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaact 25690807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 16780876 - 16780773
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaa 109  Q
    ||||||||||||| || |||||||| |||| |||||||||||||   | ||||||| ||||||||||||||| |||||||||||  ||| ||||| ||||    
T  16780876 gagttaactcatgctcgacattttt-cagcatgagttaacttacgcgggcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaa 16780778  T
Q  110 aagtg 114  Q
    |||||    
T  16780777 aagtg 16780773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 31726755 - 31726640
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaa 109  Q
    ||||||||||| | || |||||||| |||| | |||||||||||| | |||||||| || ||||||||||||| ||||||| ||| ||| ||||| ||||    
T  31726755 gagttaactcacgctcgacattttt-cagcataagttaacttacactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaa 31726657  T
Q  110 aagtgccagcgtgagtt 126  Q
    ||||  |||| ||||||    
T  31726656 aagtatcagcatgagtt 31726640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 35852032 - 35851960
Alignment:
Q  56 tgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaa 128  Q
    |||||||||| ||||||||||||||| ||| |||||||| ||| ||||| ||||||||| ||| |||||||||    
T  35852032 tgacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcagtgtgagttaa 35851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 37108998 - 37108921
Alignment:
Q  53 cattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||| ||||||||||||||||| || ||||||||||| ||| | |||||||||||   ||||| |||||||||    
T  37108998 cattgacaccttttagatcggttcaattatattttaagtcggttcaactgattttaaaagcatcagcgggagttaact 37108921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 41433028 - 41432941
Alignment:
Q  6 gcgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgg 94  Q
    ||||||||||||||| | |||| |||||| ||| |  | |||||| ||| | |||||||||||||||||||||||| ||||||||||||    
T  41433028 gcgggagttaactcacgctcaatattttt-cagtggtatttaactcacactaacactttttagatcggttcaatcactttttaagtcgg 41432941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 5815178 - 5815111
Alignment:
Q  59 cactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagtt 126  Q
    ||||||||| || |||||||||| |||||||||| ||||| ||||| ||||||||||||  |||||||    
T  5815178 cactttttaaattggttcaatcactttttaagtcaggtcaaccgatcttaaaagtgccaatgtgagtt 5815111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 48078598 - 48078668
Alignment:
Q  60 actttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||| |||||  |||||||| |||||||||||| ||| ||||| |||||||||||| || |||||||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaact 48078668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 101278 - 101236
Alignment:
Q  153 tgaaaaatgccgagcatgagtcaactctcgctgggtcaaggga 195  Q
    ||||||||||||||||||||| ||||| || ||||||||||||    
T  101278 tgaaaaatgccgagcatgagttaactcccgttgggtcaaggga 101236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 11754754 - 11754690
Alignment:
Q  56 tgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcg 120  Q
    |||||||||| ||||||||||||||| ||||||  |||| ||| || || ||||||||| |||||    
T  11754754 tgacacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagtgtcagcg 11754690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 45773215 - 45773247
Alignment:
Q  56 tgacactttttagatcggttcaatcatttttta 88  Q
    |||||||||||||||||||||||||| ||||||    
T  45773215 tgacactttttagatcggttcaatcacttttta 45773247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 27177327 - 27177395
Alignment:
Q  46 taacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtg 114  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  27177327 taactcacactgacactttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaagtg 27177395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 581146 - 581048
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||| |||||||||||||| ||| || ||||||| ||| | ||||||| | |||||||||| | ||| ||||| |||||||| ||||||||||||||||    
T  581146 ttttttagcgtgagttaactcacactg-cacttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaact 581048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 6588319 - 6588390
Alignment:
Q  43 agttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtg 114  Q
    |||||||| ||  ||||||||||| ||||||||||| ||| ||||||||||||||| ||||| |||||||||    
T  6588319 agttaactcacgctgacacttttttgatcggttcaaacatgttttaagtcgggtcaaccgatcttaaaagtg 6588390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 128
Target Start/End: Complemental strand, 12767420 - 12767323
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaa 128  Q
    ||||||| | |||||||||| ||  | |||||||| |||||| |||||||| |||||||||||| ||| ||||| ||| ||||| ||||||| |||||    
T  12767420 tttttcaacttgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcgtgggttaa 12767323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 25258137 - 25258079
Alignment:
Q  56 tgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtg 114  Q
    |||||||||| ||||| ||||||||| |||||||||||| ||| ||||| |||||||||    
T  25258137 tgacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtg 25258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 52205098 - 52205030
Alignment:
Q  60 actttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||||||| |||||||| |||| ||||||||||| ||||| ||||||||| |||| ||||||||||    
T  52205098 actttttagatcg-ttcaatcactttt-aagtcgggtcaaccgatcttaaaagtgtcagcatgagttaact 52205030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 40413498 - 40413445
Alignment:
Q  58 acactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaa 111  Q
    ||||| || ||||||||||||||| |||||||||||||||| ||||| ||||||    
T  40413498 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 40413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 50670157 - 50670089
Alignment:
Q  62 tttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||| |||||| ||||||||||||||| ||  | ||| ||||||||||||||| |||||| ||||||||    
T  50670157 ttttaagatcgattcaatcattttttacgtaagttcaaccgattttaaaagtgtcagcgtaagttaact 50670089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 37059063 - 37058992
Alignment:
Q  43 agttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtg 114  Q
    |||||||| || || ||| |||| |||||| ||||||||||||||||||||  ||| ||||| |||||||||    
T  37059063 agttaactcactttaacatttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtg 37058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 162
Target Start/End: Complemental strand, 54788239 - 54788210
Alignment:
Q  133 caacgtaagttaactcacgttgaaaaatgc 162  Q
    ||||||||||||||||||||||||||||||    
T  54788239 caacgtaagttaactcacgttgaaaaatgc 54788210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 50670077 - 50670121
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggtt 75  Q
    |||||||||||||||||||||||  |||||||||| | |||||||    
T  50670077 tttttcagcgtgagttaacttacgctgacacttttaaaatcggtt 50670121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 32191256 - 32191144
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaa 109  Q
    ||||||||||  |||| |||||||| |||||||||||||||| || |||||||  ||||     |||||||||||||||||| || ||| ||||| ||||    
T  32191256 gagttaactctcgttcgacattttt-cagcgtgagttaacttgcactgacactgattag-----ttcaatcattttttaagttggttcaaccgatcttaa 32191163  T
Q  110 aagtgccagcgtgagttaa 128  Q
    |||||||||||||||||||    
T  32191162 aagtgccagcgtgagttaa 32191144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 34062619 - 34062719
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaa 109  Q
    ||||||||||| | |||||||||| ||||||||||| |||| ||  |||||||||| | ||||||||||||| |||||||||||  ||| | ||||||||    
T  34062619 gagttaactcacgctcaacatttt-tcagcgtgagtgaactcacgctgacacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaa 34062717  T
Q  110 aa 111  Q
    ||    
T  34062718 aa 34062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 2930320 - 2930282
Alignment:
Q  56 tgacactttttagatcggttcaatcattttttaagtcgg 94  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  2930320 tgacactttttagatcggttcaatcactttttaagtcgg 2930282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Original strand, 25484934 - 25485036
Alignment:
Q  28 cattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagtta 127  Q
    ||||||||||| ||||||||| ||||  || ||||||| |||||  |||||||| |||||||| |   |||  |||| ||||||||| ||||||||||||    
T  25484934 cattttttcagtgtgagttaatttacgctggcacttttaagatcaattcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagtta 25485033  T
Q  128 act 130  Q
    |||    
T  25485034 act 25485036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 8041087 - 8041210
Alignment:
Q  5 agcgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccg-a 103  Q
    |||| ||||||||||| | || ||||||| ||||||||| ||||| |||| |  || |||| ||||||||||||||| ||||||||| || ||| ||| |    
T  8041087 agcgtgagttaactcacgctcgacatttt-tcagcgtgaattaacctacactagcatttttaagatcggttcaatcaatttttaagttggttcaaccgaa 8041185  T
Q  104 ttttaaaagtgccagcgtgagttaa 128  Q
    | ||||||||   ||||||||||||    
T  8041186 tcttaaaagttttagcgtgagttaa 8041210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 12082181 - 12082241
Alignment:
Q  70 tcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||||||| ||| |||||||||||| ||||| |||||||||  ||| ||||||||||    
T  12082181 tcggttcaatcactttgtaagtcgggtcaaccgatcttaaaagtggtagcatgagttaact 12082241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 31847474 - 31847517
Alignment:
Q  130 tgtcaacgtaagttaactcacgttgaaaaatgccgagcatgagt 173  Q
    ||||||| ||||||||||||||||||||||| | ||||||||||    
T  31847474 tgtcaacataagttaactcacgttgaaaaatacagagcatgagt 31847517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 34123222 - 34123167
Alignment:
Q  75 tcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||| ||||||||  || ||| ||||||||||||||| |||||||||||||||    
T  34123222 tcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaact 34123167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 31847503 - 31847400
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaat--cattt--tttaagtcgggtcagccgattttaaaagtgccagcgtgagtt 126  Q
    ||||||| ||||||||||||||  ||||||||||||| |||| || |||  |||||  || ||||||| ||  ||||| ||||||||| ||||| |||||    
T  31847503 tttttcaacgtgagttaacttatgttgacactttttaaatcgattaaataacattttattaaagtcggttcgaccgatcttaaaagtgtcagcgagagtt 31847404  T
Q  127 aact 130  Q
    ||||    
T  31847403 aact 31847400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 17916233 - 17916173
Alignment:
Q  70 tcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||| ||||| |||||||||||| |||  |||| ||||||||| ||||| |||||||||    
T  17916233 tcggtttaatcactttttaagtcggttcaatcgatcttaaaagtgtcagcgagagttaact 17916173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 31847407 - 31847320
Alignment:
Q  140 agttaactcacgttgaaaaatgccgagcatgagtcaactctcgctgggtcaagggaaataggaaattttgaaagagagaagaacaattt 228  Q
    |||||||||||| ||||||||| ||||| | ||| |||| | |||||||||| || |||  | ||||||||||| ||||||| ||||||    
T  31847407 agttaactcacgctgaaaaatgtcgagcgtaagttaactattgctgggtcaaagg-aatgagcaattttgaaagggagaagagcaattt 31847320  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 30481656 - 30481735
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaag 90  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||| || ||||||| ||||| ||||||| ||||||||||    
T  30481656 gagttaactcatgttcgacatttttt-agcgtgagttaactcacactggcacttttaagatcagttcaataattttttaag 30481735  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 15404919 - 15405006
Alignment:
Q  43 agttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||| || |||| |||||| | |  |||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||    
T  15404919 agttaactcacgttgatacttttaaaactggttcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagttaact 15405006  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 33710568 - 33710667
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |||  ||  |||  | || |||||||||  ||||||||||||||    
T  33710568 tttttcagcgtgagttaacttacgctgacacttttaagatcggttcaatcattttctaaaccgattcaaacaatcttaaaagtgttagcgtgagttaact 33710667  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 21488865 - 21488926
Alignment:
Q  58 acactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagc 119  Q
    |||||||| |||||||||||||||||||||||||| | ||| ||||| ||||||||| ||||    
T  21488865 acacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtgtcagc 21488926  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 23465838 - 23465778
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagt 91  Q
    ||||||||||| |||||||||||  |||||||||| ||||||||||||| | |||||||||    
T  23465838 tttttcagcgtaagttaacttacgatgacacttttaagatcggttcaattactttttaagt 23465778  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 12670733 - 12670841
Alignment:
Q  5 agcgggagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgat 104  Q
    |||| |||||||||||  ||| |||||||  || ||||| |||||| ||  |||||||||| ||||||||||||||| |||||||| ||  ||| |||||    
T  12670733 agcgtgagttaactcacattcgacattttg-caacgtgacttaactcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgat 12670831  T
Q  105 tttaaaagtg 114  Q
     |||||||||    
T  12670832 cttaaaagtg 12670841  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 7152083 - 7152163
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaa 111  Q
    |||||||||||||||||||| || || |||||||| | ||||||||||| | |||||||  ||| ||| ||||||| ||||    
T  7152083 tttttcagcgtgagttaactcacgttaacacttttaatatcggttcaattactttttaaaccggttcaaccgatttaaaaa 7152163  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 15538954 - 15539018
Alignment:
Q  59 cactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtga 123  Q
    ||||||| ||||||||||||| | |||||||||||| |||  |||| ||||||||| ||||||||    
T  15538954 cacttttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtgtcagcgtga 15539018  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 4422878 - 4422823
Alignment:
Q  59 cactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtg 114  Q
    ||||||||||||||| ||||||| |||||||||||  ||| ||||| |||||||||    
T  4422878 cactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaagtg 4422823  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 23465809 - 23465852
Alignment:
Q  130 tgtcaacgtaagttaactcacgttgaaaaatgccgagcatgagt 173  Q
    ||||| |||||||||||| ||| |||||||||||||||||||||    
T  23465809 tgtcatcgtaagttaacttacgctgaaaaatgccgagcatgagt 23465852  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 37172674 - 37172624
Alignment:
Q  42 gagttaacttacattgacactttttagatcggttcaatcattttttaagtc 92  Q
    |||||||||  ||||||||||||| | ||||||||||||| ||||||||||    
T  37172674 gagttaactcccattgacacttttaacatcggttcaatcactttttaagtc 37172624  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 34557393 - 34557320
Alignment:
Q  57 gacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||| |||| ||||| ||||||||||||||||| |||| |||  |||| ||||||||||  | |||||||||||    
T  34557393 gacatttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtgctggtgtgagttaact 34557320  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 18398655 - 18398556
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||| ||| |||||||  ||| ||| ||||| ||| || |  |||||||||||||||    
T  18398655 tttttcaacgtgagttaacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatcttataattttcagcgtgagttaact 18398556  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 31536518 - 31536435
Alignment:
Q  10 gagttaactcatgttcaacattttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgg 94  Q
    ||||||||||| |||||||||||||| | || ||||||||| ||| ||| | |||| ||||||||||||| ||||||||||||||    
T  31536518 gagttaactcacgttcaacattttttaa-cgagagttaactcacactgatatttttaagatcggttcaataattttttaagtcgg 31536435  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 23311748 - 23311849
Alignment:
Q  29 attttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaa 128  Q
    ||||||| |||||||||||||| || |||  | |||| ||||||||| ||| |||||||||||| | ||| || || ||||||||| || ||||||||||    
T  23311748 atttttttagcgtgagttaactcacgttggtatttttaagatcggttaaattattttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagttaa 23311847  T
Q  129 ct 130  Q
    ||    
T  23311848 ct 23311849  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 9963009 - 9962910
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||||| |||||||| ||| |||||||||| |||| | |||||||| |||| ||   || ||| ||||| |||||| ||| ||||||||||||||    
T  9963009 tttttcagcgtaagttaactcacaatgacacttttaagattgattcaatcacttttcaatctggttcaaccgatcttaaaaatgctagcgtgagttaact 9962910  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 35895010 - 35895109
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||||||  || ||||||||  |||||||||||||||| ||| ||| | ||||||||||||||||  |||| |||||| || |||  ||||||||||    
T  35895010 tttttcagcggtaggtaacttacgctgacactttttagatcagttaaattactttttaagtcgggtcaatcgatcttaaaaatgtcagtatgagttaact 35895109  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 35943602 - 35943531
Alignment:
Q  59 cactttttagatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    ||||||| ||||||||||||| |||||||||||| | ||| |||||||||| | || |||| ||||||||||    
T  35943602 cacttttaagatcggttcaattattttttaagtcagttcaaccgattttaagaatgtcagcatgagttaact 35943531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 2978519 - 2978462
Alignment:
Q  69 atcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagtt 126  Q
    |||||||||| |||||||||| |||| |||  |||||||||||||| |||||||||||    
T  2978519 atcggttcaaccattttttaaatcggatcaatcgattttaaaagtgtcagcgtgagtt 2978462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 36289591 - 36289652
Alignment:
Q  31 tttttcagcgtgagttaacttacattgacactttttagatcggttcaatcattttttaagtc 92  Q
    |||||||||||||||||  | |||||||||||||| |||||| || ||||| ||||||||||    
T  36289591 tttttcagcgtgagttagttcacattgacacttttaagatcgatttaatcactttttaagtc 36289652  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9962868 - 9962917
Alignment:
Q  1 atttagcgggagttaactcatgttcaacattttttcagcgtgagttaact 50  Q
    |||||||| |||||||||| || || ||||||||||||| ||||||||||    
T  9962868 atttagcgtgagttaactcgtgctcgacattttttcagcatgagttaact 9962917  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 188198 - 188135
Alignment:
Q  67 agatcggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||| ||||||||||||||  | | ||| | ||||||||||||| |||||||||||||||    
T  188198 agatcggtccaatcattttttaaacctgttcaacggattttaaaagtgtcagcgtgagttaact 188135  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 2608444 - 2608387
Alignment:
Q  71 cggttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaa 128  Q
    ||||||||||| ||||||||| || ||| || ||||||||| ||| ||||||||||||    
T  2608444 cggttcaatcactttttaagttggttcaaccaattttaaaaatgctagcgtgagttaa 2608387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 20694652 - 20694596
Alignment:
Q  74 ttcaatcattttttaagtcgggtcagccgattttaaaagtgccagcgtgagttaact 130  Q
    |||||||| ||||||||| | |||| || || |||||||||||| ||||||||||||    
T  20694652 ttcaatcactttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaact 20694596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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