View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5606_low_6 (Length: 405)
Name: NF5606_low_6
Description: NF5606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5606_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 9361205 - 9360825
Alignment:
| Q |
19 |
tctaggacactggttgattatgtcaaaagatgaagttttatgttgaaaattacacttttgaggcactgactgcacaatttccaatataatactattatat |
118 |
Q |
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| T |
9361205 |
tctaggatactggttgatgatgtcaaaagatgaagttttaagttgaaaattacacttttgaggcactgactgcacaatttccaatataatactattatat |
9361106 |
T |
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| Q |
119 |
ttgactttcttaaccagcacttcaagaatactagttagcatttcctatatttaaaatcatttgacaagctaaagtgaaggattcaaaacatactcatttg |
218 |
Q |
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| T |
9361105 |
ttgactttcttaaccggtgcttcacgaatataagtcagcattttctatatttaaaatcatttgataagctaaagtgaaggattcaaaacatactcatttg |
9361006 |
T |
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| Q |
219 |
tgaaccataggcatggtaattaagcaaaggcctagtagtgaggttgagattggtgcaagttgagttagattcatcaaagggacttgtgattgctgatttg |
318 |
Q |
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| T |
9361005 |
tgaaccataggcatggtaattaagcaaaggcctagtagtgaggttgagattggtgcaagttgagttagattcatcaaagggacttgtgattgctgatttg |
9360906 |
T |
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| Q |
319 |
ctagctacattattatttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgcttc |
399 |
Q |
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| T |
9360905 |
ctagctacattattatttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgcttc |
9360825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 396
Target Start/End: Complemental strand, 9348317 - 9348255
Alignment:
| Q |
334 |
tttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgc |
396 |
Q |
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| T |
9348317 |
tttgctgggatttcatatgttagcttttcctttcttgcaatagatgataggagttccctttgc |
9348255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 396
Target Start/End: Complemental strand, 9356342 - 9356280
Alignment:
| Q |
334 |
tttgctgggatttgaaatgttagctttctctttcttgaaatagatgataatagttccctttgc |
396 |
Q |
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| T |
9356342 |
tttgctgggatttcatatgttagcttttcctttcttgcaatagatgataggagttccctttgc |
9356280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 41128827 - 41128880
Alignment:
| Q |
68 |
ttacacttttgaggcactgactgcacaatttccaatataatactattatatttg |
121 |
Q |
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| T |
41128827 |
ttacacttttgaggaattgattacacaagttccaatataatactattatatttg |
41128880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 41143858 - 41143805
Alignment:
| Q |
68 |
ttacacttttgaggcactgactgcacaatttccaatataatactattatatttg |
121 |
Q |
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| T |
41143858 |
ttacacttttgaggaattgattacacaagttccaatacaatactattatatttg |
41143805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 20393971 - 20393922
Alignment:
| Q |
85 |
tgactgcacaatttccaatataatactattatatttgactttcttaaccag |
135 |
Q |
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| T |
20393971 |
tgactgcacaagttccaatataatattattatatttg-cttccttaaccag |
20393922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 30863057 - 30863094
Alignment:
| Q |
85 |
tgactgcacaatttccaatataatactattatatttga |
122 |
Q |
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| T |
30863057 |
tgactacacaatttacaatataatactattatatttga |
30863094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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