View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5607_high_6 (Length: 249)
Name: NF5607_high_6
Description: NF5607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5607_high_6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 4916748 - 4916517
Alignment:
| Q |
18 |
gatacggtcttgatgatcatgagcaacagacctcttagtcccttgtccttgtgtatttttagtttcaacaacgttttgattttgaggtagttgtgtttgt |
117 |
Q |
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| T |
4916748 |
gatacggtcttgatgatcatgagcaacagacctcttagtcccttgtccttgtgtatttttagtttcaacaatgttttgattttgaggtagttgtgtttgt |
4916649 |
T |
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| Q |
118 |
gacactgtaacaacttcatgcaaagtgttgttcgttttcaacttcttgttgtctctttccaaatttgtttccaaaggacaagaagagtagctttcaaaaa |
217 |
Q |
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| T |
4916648 |
gacactggaacaacttcatgcaaagtgttgttcgttttcaacttcttgttgtctctttccaaatttgtttccaaagtacaagaagagtagctttcaaaaa |
4916549 |
T |
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| Q |
218 |
gtaacaatggttgttgttccaaattttcctct |
249 |
Q |
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| T |
4916548 |
gtaacaatggttgttgttgcaaattttcctct |
4916517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 4891960 - 4891890
Alignment:
| Q |
31 |
tgatcatgagcaacagacctcttagtcccttgtccttgtgtatttttagtttcaacaacgttttgattttg |
101 |
Q |
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| T |
4891960 |
tgattatgagccacagacctcttagttccttgtccttgtggctttatagtttcaacaatgttttgtttttg |
4891890 |
T |
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