View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5607_low_3 (Length: 407)
Name: NF5607_low_3
Description: NF5607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5607_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 23 - 367
Target Start/End: Original strand, 46163482 - 46163825
Alignment:
| Q |
23 |
atgttcgttgtgattttaccgaactaaccatcaatccaaagatacactatgaccaaataaataagannnnnnnngctttgttgcaactttatttaagaac |
122 |
Q |
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| T |
46163482 |
atgttcgttgtgattttaccgaactaaccatcaatccaaagatacactatgaccaaataaatgagattttttttgctttgttgcaactttatttaagaac |
46163581 |
T |
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| Q |
123 |
ttaatagttctagatatannnnnnnncctttgaaaactcggtatcgaccctaggacgactaatatttactgtacaaatatttgaaaagagaacataaaat |
222 |
Q |
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| T |
46163582 |
ttaatagttctagatattttttttttcctttgaaaactcggtatcgaccctaggacgactaatatttactgtacaaatatttgaaaagagaacataaaat |
46163681 |
T |
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| Q |
223 |
gaaacaaagtaatattttttctaattaaaagtgaaataaataaaaccggcttctcttatcattttcttcttacgtgttttattgtaaccttatgaatctt |
322 |
Q |
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| T |
46163682 |
gaaacaaagtaatattttttctaattaaaagtgaaataaataaaaccggcttctctgatcattttcttcttacgtgttttattgtaaccttatgaatctt |
46163781 |
T |
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| Q |
323 |
ggttttttgaaaatgtagtaccacattacattacatgacaaaaca |
367 |
Q |
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| T |
46163782 |
gg-tttttgaaaatgtagtaccacattacattacatgacaaaaca |
46163825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 46239585 - 46239534
Alignment:
| Q |
298 |
gttttattgtaaccttatgaatcttggttttttgaaaatgtagtaccacatta |
350 |
Q |
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| T |
46239585 |
gttttattgttaccacatgaatcttggttttt-gaaaatgtagtactacatta |
46239534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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