View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5607_low_4 (Length: 268)
Name: NF5607_low_4
Description: NF5607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5607_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 3732023 - 3731770
Alignment:
| Q |
1 |
gagtattgaccatagttgagttttaatttgtatttgatgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaa |
100 |
Q |
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| T |
3732023 |
gagtattgactatagttgagttttaatttgtatttgatgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaa |
3731924 |
T |
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| Q |
101 |
atgttatccccatggataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataacc |
200 |
Q |
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| T |
3731923 |
atgttatccccatggataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataacc |
3731824 |
T |
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| Q |
201 |
acacaagaaaggcttatcaagcatcatgtgtcagaacaagagaaaacactaaga |
254 |
Q |
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| T |
3731823 |
acacaagaaaggcttatcaagcatcatgtgtcagaacaagagaaaacactaaga |
3731770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11684327 - 11684088
Alignment:
| Q |
17 |
tgagttttaatttgtatttg--atgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatg |
114 |
Q |
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| T |
11684327 |
tgagttttaatttgttttttcaatgtcattcattttttggtacataatcaggaattcaaatttccagaatacacagaagtgaaaaaatgctatcctcatg |
11684228 |
T |
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| Q |
115 |
gataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggct |
214 |
Q |
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| T |
11684227 |
gattccatggggttgataaatgtggcaggtctgtgtatatcgagagaattgggatgatagatgttaacaaactgtggcaaataaccacacaagaaaggct |
11684128 |
T |
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| Q |
215 |
tatcaagcatcatgtgtcagaacaagagaaaacactaaga |
254 |
Q |
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| T |
11684127 |
tatcaagcatcatgtgtcagaacaagagaaaaccctaaga |
11684088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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