View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5607_low_6 (Length: 251)
Name: NF5607_low_6
Description: NF5607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5607_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4916523 - 4916289
Alignment:
| Q |
1 |
ttcctcttgttgaaaaatacttgctatgtcatgtgaaataagctcttcttcaccaaacaagttttgttcgcattgttgaaacaaatcacaaccctctatt |
100 |
Q |
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| T |
4916523 |
ttcctcttgttgaaaaatacttgctatgtcatgtgaaataagctcttcttcaccaaacaagttttgttcgcattgttgaaacaaatcacaaccctctatt |
4916424 |
T |
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| Q |
101 |
tccttttcttcaaatagctgaaaccagaagaagaaaaaatgataactgtataaaaatcattacataattaaattcagttcatttgtgtatatatataatt |
200 |
Q |
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| T |
4916423 |
tcattttcttcaaatagctgaaaccagaagaagaaaaaatgataactgtataaaaatcattacataattaaattcagttcatttgtgtatatatataatt |
4916324 |
T |
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| Q |
201 |
agaactatgtcacttgaataaaaacaattcttaca |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4916323 |
agaactatgtcacttgaataaaaacaattcttaca |
4916289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 4891667 - 4891544
Alignment:
| Q |
1 |
ttcctcttgttgaaaaatacttgctatgtcatgtgaaataagctcttcttcaccaaacaagttttgttcgcattgttgaaacaaatcacaaccctctatt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4891667 |
ttcctcttgttgaaaaatacttgctatgtcatttgaaagaaactctttttcaccaaacaagttttgttcacattgttgaaacaaatcacaaccctctatt |
4891568 |
T |
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| Q |
101 |
tccttttcttcaaatagctgaaac |
124 |
Q |
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||| ||||||| |||||||||||| |
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| T |
4891567 |
tccatttcttccaatagctgaaac |
4891544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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