View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_high_11 (Length: 300)
Name: NF5608_high_11
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_high_11 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 132370 - 132087
Alignment:
| Q |
6 |
tatgatatagctagtatgtataagcacttatataataagtgtttgattaaactgtttatcttaacatggtctaagtgtgtgtttggttacgcatttcctg |
105 |
Q |
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| T |
132370 |
tatgatatagctagtatgtataagcacttatatgataagtttttgattaaattgtttaacttaacatggcctaagtgtgtgtttggttacgcatttcctg |
132271 |
T |
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| Q |
106 |
tcacttttttatgtaaattttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaattttaaccgggatttttcacttt--- |
202 |
Q |
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| T |
132270 |
tcacttttttatgtaaattttgactgggatttttataagctctaaattgtagctttaactttaccttgcttcaattttgaccgggatttttcactttacc |
132171 |
T |
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| Q |
203 |
-acctcaatttaggcctctgcgggttctactcctctcaccaaccttgcttcaccaactcgagggtttcattcgataccaaattg |
285 |
Q |
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| T |
132170 |
tacctcaatttaggcctctgcaggttctactcctctcaccaaccttgcttcaccaactcgagggtttcattcgataccaaattg |
132087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 18232851 - 18233118
Alignment:
| Q |
6 |
tatgatatagctagtatgtataagcacttatataataagtgtttgattaaactgtttatcttaacatggtctaagtgtgtgtttggttacgcatttcctg |
105 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
18232851 |
tatgatatagctagtatgtataagcacttatatgataagtgtttgattaaactgtttatcttaacatggcctacgtgtgtgtttggttacgcatttcctg |
18232950 |
T |
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| Q |
106 |
tcacttttttatgtaaattttgaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaattttaaccgggatttttcactttacc |
205 |
Q |
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| T |
18232951 |
tcacttttt------------gaccgggatttttataagctctaaattgaagctttcactttaccttgcttcaattttgaccgggatttttcactttacc |
18233038 |
T |
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| Q |
206 |
tcaatttaggcctctgcgggttctactcctctcaccaaccttgcttcaccaactcgagggtttcattcgataccaaattg |
285 |
Q |
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| T |
18233039 |
tcaatttaggcctctgcggattctactcctctcaccaaccttgcttcaccaactcgaggatttcattcgataccaaattg |
18233118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 3169373 - 3169413
Alignment:
| Q |
25 |
ataagcacttatataataagtgtttgattaaactgtttatc |
65 |
Q |
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| T |
3169373 |
ataagcacttatatgataagtgtttcattaaaccgtttatc |
3169413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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