View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_high_13 (Length: 273)
Name: NF5608_high_13
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 37091935 - 37092193
Alignment:
| Q |
11 |
catagggcggctgttaattttgatgccaccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttact |
110 |
Q |
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| T |
37091935 |
catagggcggctgttaattttgatgccaccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttact |
37092034 |
T |
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| Q |
111 |
tgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat |
210 |
Q |
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| T |
37092035 |
tgaagaacataagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat |
37092134 |
T |
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| Q |
211 |
taagaatcatcacatactgttaacattagtcttttttggtgtaaacccggtatcctccg |
269 |
Q |
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| T |
37092135 |
taagaatcatcacatactcttaacattagtcttttttggtgtaaaccgggtatcctccg |
37092193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 17346433 - 17346262
Alignment:
| Q |
39 |
ccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctg |
138 |
Q |
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| T |
17346433 |
ccataaccacctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttctgtcctg |
17346334 |
T |
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| Q |
139 |
gtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat |
210 |
Q |
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| T |
17346333 |
gagagattggacaatttgtaccatacactccatcctgccatgagtttctcctctgtagcactccattcctat |
17346262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 39 - 210
Target Start/End: Original strand, 17137361 - 17137529
Alignment:
| Q |
39 |
ccataaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctg |
138 |
Q |
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| T |
17137361 |
ccataacctcctgctgccttgtgaaatgcaagggaaggaaagtagaaatagctgccaatctgatcttttacttgaagaatataagt---gttctttcctg |
17137457 |
T |
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| Q |
139 |
gtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcctat |
210 |
Q |
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| T |
17137458 |
gagagattggacaatttgtaccatacactccatcttgccatgagtttctcctctgcagcactccattcctat |
17137529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 55295414 - 55295338
Alignment:
| Q |
120 |
taagtaaagttctgccctggtggaattggacagtttgttccatatactccatcttgccatgaattcctcctctgctg |
196 |
Q |
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| T |
55295414 |
taagtgaagttcttcccaggcgggatcggacagtttgtgccagaaactccatcctgccatgagttcctcctgtgctg |
55295338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 8571806 - 8571971
Alignment:
| Q |
43 |
aaccacctgcggccttgtgtaatgcaagggagggaaagtaaaagtagctaccaatctgatcttttacttgaagaacataagtaaagttctgccctggtgg |
142 |
Q |
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||||||| || || ||||| |||||||| || || || ||| || | |||||||| ||||||||||||||||| | || || ||||||| || ||||| |
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| T |
8571806 |
aaccaccagcagctttgtggaatgcaagagatgggaaataatagaaactaccaatttgatcttttacttgaagtatgtatgtgaagttctttccaggtgg |
8571905 |
T |
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| Q |
143 |
aattggacagtttgttccatatactccatcttgccatgaattcctcctctgctgcactccattcct |
208 |
Q |
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| T |
8571906 |
aatgggacatgttgttccaaacactccatcttcgtatgagttccttctctgctggactccattcct |
8571971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 6796848 - 6796801
Alignment:
| Q |
137 |
tggtggaattggacagtttgttccatatactccatcttgccatgaatt |
184 |
Q |
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| T |
6796848 |
tggtggaataggacagtttgttcccagtactccatcttgccatgaatt |
6796801 |
T |
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