View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5608_high_14 (Length: 263)

Name: NF5608_high_14
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5608_high_14
NF5608_high_14
[»] chr2 (14 HSPs)
chr2 (1-239)||(37092198-37092421)
chr2 (1-50)||(5394485-5394534)
chr2 (1-50)||(25423833-25423882)
chr2 (1-42)||(17981594-17981635)
chr2 (10-52)||(14121894-14121936)
chr2 (1-42)||(14551571-14551612)
chr2 (9-52)||(7020371-7020414)
chr2 (1-44)||(17655756-17655799)
chr2 (1-47)||(39401072-39401118)
chr2 (1-50)||(9438139-9438188)
chr2 (1-50)||(31579232-31579281)
chr2 (5-50)||(37180008-37180053)
chr2 (1-42)||(42745119-42745160)
chr2 (1-41)||(1682120-1682160)
[»] chr4 (18 HSPs)
chr4 (105-238)||(17345507-17345641)
chr4 (107-238)||(17138878-17139010)
chr4 (1-50)||(31307069-31307118)
chr4 (1-52)||(9012357-9012408)
chr4 (1-50)||(38766178-38766227)
chr4 (1-50)||(51626309-51626358)
chr4 (1-49)||(35334101-35334149)
chr4 (1-52)||(33529344-33529395)
chr4 (1-51)||(35972431-35972481)
chr4 (1-52)||(14854692-14854743)
chr4 (1-44)||(45994617-45994660)
chr4 (1-51)||(13686690-13686740)
chr4 (1-50)||(46016238-46016287)
chr4 (1-48)||(13948595-13948642)
chr4 (1-52)||(15133462-15133513)
chr4 (2-51)||(36990098-36990147)
chr4 (1-50)||(46250558-46250607)
chr4 (7-51)||(51853784-51853828)
[»] chr8 (13 HSPs)
chr8 (1-47)||(2744025-2744071)
chr8 (1-50)||(4125027-4125076)
chr8 (1-50)||(7839256-7839305)
chr8 (3-44)||(12958090-12958131)
chr8 (1-52)||(19715728-19715780)
chr8 (1-50)||(13468748-13468797)
chr8 (9-50)||(30056012-30056053)
chr8 (1-50)||(30936093-30936142)
chr8 (1-44)||(36994503-36994546)
chr8 (1-36)||(39086855-39086890)
chr8 (5-52)||(24988586-24988633)
chr8 (9-50)||(15683018-15683059)
chr8 (12-44)||(8521793-8521825)
[»] chr5 (8 HSPs)
chr5 (1-50)||(5123501-5123550)
chr5 (1-50)||(10592016-10592065)
chr5 (2-51)||(36212984-36213033)
chr5 (1-44)||(31113429-31113472)
chr5 (1-42)||(22188001-22188042)
chr5 (1-52)||(25983752-25983803)
chr5 (1-47)||(29553631-29553677)
chr5 (1-50)||(30784989-30785038)
[»] chr3 (12 HSPs)
chr3 (1-50)||(27763810-27763859)
chr3 (1-42)||(8757441-8757482)
chr3 (1-50)||(30995968-30996017)
chr3 (1-52)||(25224786-25224837)
chr3 (1-52)||(38331215-38331266)
chr3 (1-50)||(20861337-20861386)
chr3 (1-48)||(1642697-1642744)
chr3 (8-51)||(15446084-15446127)
chr3 (1-52)||(48204314-48204365)
chr3 (1-44)||(55123192-55123235)
chr3 (10-51)||(15283159-15283200)
chr3 (1-43)||(39950308-39950350)
[»] chr1 (14 HSPs)
chr1 (1-50)||(42297445-42297494)
chr1 (1-43)||(16756178-16756220)
chr1 (1-50)||(49071666-49071715)
chr1 (1-51)||(15642543-15642593)
chr1 (9-50)||(12035639-12035680)
chr1 (1-50)||(36806700-36806749)
chr1 (1-49)||(9780992-9781040)
chr1 (1-44)||(22022215-22022258)
chr1 (1-52)||(46864178-46864229)
chr1 (2-52)||(44913196-44913246)
chr1 (5-50)||(28724761-28724806)
chr1 (4-43)||(6607700-6607739)
chr1 (1-44)||(10367599-10367642)
chr1 (1-34)||(18428145-18428178)
[»] chr7 (12 HSPs)
chr7 (1-50)||(29059894-29059943)
chr7 (1-50)||(31492192-31492241)
chr7 (1-52)||(19477253-19477303)
chr7 (1-42)||(28665187-28665228)
chr7 (1-42)||(37339736-37339777)
chr7 (1-52)||(20207584-20207635)
chr7 (1-44)||(21747043-21747086)
chr7 (12-50)||(14545032-14545070)
chr7 (1-51)||(29428795-29428845)
chr7 (1-44)||(31776513-31776556)
chr7 (1-47)||(45778956-45779002)
chr7 (14-50)||(13254117-13254153)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-50)||(26420-26469)
[»] chr6 (9 HSPs)
chr6 (1-49)||(12836900-12836948)
chr6 (1-48)||(9536858-9536905)
chr6 (12-50)||(423744-423782)
chr6 (1-51)||(21028845-21028895)
chr6 (1-51)||(21028982-21029032)
chr6 (1-47)||(28099335-28099381)
chr6 (1-51)||(28933226-28933276)
chr6 (1-50)||(12411237-12411286)
chr6 (1-50)||(31412211-31412260)
[»] scaffold0071 (1 HSPs)
scaffold0071 (8-51)||(16065-16108)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-43)||(29155-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-52)||(27228-27279)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37092198 - 37092421
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaagatgatactttnnnnnnnnnnnnnctaaacaagaaagttagaagagaga 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||    
T  37092198 caactgcggagactaatccctcgagcactgtgggacccaaatggacggcaagatgatacttt---------------aaacaagaaagttagaagagaga 37092282  T
Q  101 gtaaactaaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcaagttatcattagtgacagattcaatctgtggtcctggaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092283 gtaaactaaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcaagttatcattagtgacagattcaatctgtggtcctggaaac 37092382  T
Q  201 tgtccatttatcaatatcccctgccatttcataaaccaa 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37092383 tgtccatttatcaatatcccctgccatttcataaaccaa 37092421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5394534 - 5394485
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5394534 caactgcggagactaatcccacgagcattgtgggacccaaatgggcggca 5394485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25423882 - 25423833
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  25423882 caactgctgagactaatccctcgagcattgtgggacccaaatgggcggca 25423833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17981635 - 17981594
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  17981635 caactgcggagactaatctctcgagcattgtgggacccaaat 17981594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 14121894 - 14121936
Alignment:
Q  10 agactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  14121894 agactaatccctcgagcattgtgggactcaaatgggcggcaag 14121936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14551612 - 14551571
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  14551612 caactgcggagattaatccctcgagcattgtaggacccaaat 14551571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 7020371 - 7020414
Alignment:
Q  9 gagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||| |||||||||||| |||||||||||| |||||||    
T  7020371 gagactaatcactcgagcattgtaggacccaaatgggcggcaag 7020414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17655799 - 17655756
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    |||||||||||||||||||||||||| |||||| | ||||||||    
T  17655799 caactgcggagactaatccctcgagccttgtggaatccaaatgg 17655756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 39401072 - 39401118
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 47  Q
    ||||||||||| |||||| | |||||||||||||||| |||||||||    
T  39401072 caactgcggagtctaatctcacgagcattgtgggacctaaatggacg 39401118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9438139 - 9438188
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||| |||||    
T  9438139 caactgtggaaactaatccctcaagcattgtgggacacaaatgggcggca 9438188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31579232 - 31579281
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||| |||||| ||||||||||||||||||  |||||| |||||    
T  31579232 caactgcggaaactaattcctcgagcattgtgggacttaaatgggcggca 31579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 37180008 - 37180053
Alignment:
Q  5 tgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||| |||||||||||||||| |||||||||| ||||||| |||||    
T  37180008 tgcgtagactaatccctcgagtattgtgggactcaaatgggcggca 37180053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42745119 - 42745160
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    ||||||| |||||||||||||||| |||||||| ||||||||    
T  42745119 caactgctgagactaatccctcgaccattgtggaacccaaat 42745160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1682160 - 1682120
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaa 41  Q
    ||||||||||||||||||||||||| ||| | |||||||||    
T  1682160 caactgcggagactaatccctcgagtattataggacccaaa 1682120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 17345641 - 17345507
Alignment:
Q  105 actaaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcaagttatcattagtgacagattcaatctgtggtcctggaaactgtc 204  Q
    |||||||||||||| |||||||||| |||||||||||| |||||| | | |||||| ||||||||||| || || ||||||||||| || ||||| ||||    
T  17345641 actaaccaagaaatgaggaaaggttcatccaagctattaaaaacattgataatcaaattatcattagtcactgactcaatctgtggcccaggaaattgtc 17345542  T
Q  205 catttatcaatatcccctgc-catttcataaacca 238  Q
    |||||||||| ||||||||| ||||||| ||||||    
T  17345541 catttatcaaaatcccctgcacatttcacaaacca 17345507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 17138878 - 17139010
Alignment:
Q  107 taaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcaagttatcattagtgacagattcaatctgtggtcctggaaactgtcca 206  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| | | |||||| ||||||||||| || || ||||||||||| |||||||| | ||||    
T  17138878 taaccaagaaatgaggaaaggttcatccaagctgttgaaaacattgataatcaaattatcattagtcactgactcaatctgtggccctggaaattttcca 17138977  T
Q  207 tttatcaatatcccctgc-catttcataaacca 238  Q
    |||||||| ||||||||| ||||||| ||||||    
T  17138978 tttatcaaaatcccctgcacatttcacaaacca 17139010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 31307069 - 31307118
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31307069 caactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 31307118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9012408 - 9012357
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9012408 caactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaag 9012357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 38766227 - 38766178
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  38766227 caactgcggagactaatccctcgagcattgtgagacccaaatgggcggca 38766178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 51626309 - 51626358
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  51626309 caactgcggagactaatctctcgagcactgtgggacccaaatggacggca 51626358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 35334101 - 35334149
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggc 49  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  35334101 caactgcggagactaatccctcgagtattgtgggacccaaatgggcggc 35334149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33529395 - 33529344
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||||    
T  33529395 caactgcggagactaatccctccagtattgtgggacccaaatgggcggcaag 33529344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 35972481 - 35972431
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  35972481 caactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaa 35972431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14854743 - 14854692
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||| |||||||    
T  14854743 caactgcagagactaatccctcgagaattgttggacccaaatgggcggcaag 14854692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45994660 - 45994617
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    |||||||||||||||||| ||||||||||||| |||||||||||    
T  45994660 caactgcggagactaatctctcgagcattgtgagacccaaatgg 45994617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13686740 - 13686690
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||| ||||||||||| ||||||| ||||| ||||||||||||||||||    
T  13686740 caactgtggagactaatctctcgagccttgtgagacccaaatggacggcaa 13686690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46016287 - 46016238
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||| ||||||||||| | |||||||||||||||||||||||| |||||    
T  46016287 caactacggagactaattcttcgagcattgtgggacccaaatgggcggca 46016238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13948595 - 13948642
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacgg 48  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||    
T  13948595 caactgcagagactaatccctcgagcattgtgagattcaaatggacgg 13948642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 15133513 - 15133462
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||| ||| | |||||||||||||||| ||||| ||||    
T  15133513 caactgcggagactaatctctcaaacattgtgggacccaaacggacgacaag 15133462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 36990098 - 36990147
Alignment:
Q  2 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    ||||||| | |||||| |||||||||||||||||  ||||||||||||||    
T  36990098 aactgcgaatactaattcctcgagcattgtgggattcaaatggacggcaa 36990147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46250558 - 46250607
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||| |||||||||||| | |||||||| ||||||||||||||| |||||    
T  46250558 caaccgcggagactaattcttcgagcatcgtgggacccaaatgggcggca 46250607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 51853828 - 51853784
Alignment:
Q  7 cggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    ||||||||||||||||||| |||||| |||| |||||||| ||||    
T  51853828 cggagactaatccctcgagtattgtgagaccaaaatggaccgcaa 51853784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 2744071 - 2744025
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2744071 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 2744025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4125027 - 4125076
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4125027 caactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 4125076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7839256 - 7839305
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7839256 caactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 7839305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 12958090 - 12958131
Alignment:
Q  3 actgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12958090 actgcggagactaatccctcgagcattgtgggacccaaatgg 12958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19715728 - 19715780
Alignment:
Q  1 caactgcggagactaatccc-tcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  19715728 caactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaag 19715780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13468748 - 13468797
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  13468748 caactgcggagactaatccttcgagcattgtgggactcaaatgggcggca 13468797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 30056012 - 30056053
Alignment:
Q  9 gagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  30056012 gagactaatccctcgagcattgtggaacccaaatggacggca 30056053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30936142 - 30936093
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||| |||||| |||||||||||| |||||    
T  30936142 caactgcggagactaatccctcgaacattgtcggacccaaatgggcggca 30936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 36994503 - 36994546
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    ||||||| |||||||||||||||||| |||||||||||||||||    
T  36994503 caactgcagagactaatccctcgagccttgtgggacccaaatgg 36994546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39086890 - 39086855
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggac 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  39086890 caactgcggagactaatccctcgagcattgtgggac 39086855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 24988633 - 24988586
Alignment:
Q  5 tgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    ||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  24988633 tgcggagactaatccctcgagtattgtgggactcaaatgagcggcaag 24988586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 15683059 - 15683018
Alignment:
Q  9 gagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||| |||||||||||||||||||||||| |||||| |||||    
T  15683059 gagattaatccctcgagcattgtgggacctaaatgggcggca 15683018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 8521825 - 8521793
Alignment:
Q  12 actaatccctcgagcattgtgggacccaaatgg 44  Q
    ||||||||||||||||||||||||| |||||||    
T  8521825 actaatccctcgagcattgtgggactcaaatgg 8521793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 5123501 - 5123550
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5123501 caactgcggagactaatccctcgagcattgtgggacccaaatgggcggca 5123550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 10592065 - 10592016
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| |||||    
T  10592065 caactgcagagactaatccctcgagcattgtgggactcaaatgggcggca 10592016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 36213033 - 36212984
Alignment:
Q  2 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||||||||| ||||||||||||||||||||||| |||||| ||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaa 36212984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31113472 - 31113429
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||    
T  31113472 caactgcggagactaatccctcgagtattgtgggatccaaatgg 31113429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22188001 - 22188042
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    |||||||||||||||||||||| || ||||||||||||||||    
T  22188001 caactgcggagactaatccctctagtattgtgggacccaaat 22188042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25983803 - 25983752
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||| ||||| |||| |||||| ||||||| |||||||    
T  25983803 caactgcggagactaatcactcgaacattatgggactcaaatgggcggcaag 25983752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29553677 - 29553631
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 47  Q
    ||||||| |||||||||| || ||||||| |||||||||||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacg 29553631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30784989 - 30785038
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||||| || ||||||| |||| ||||||| ||||    
T  30784989 caactgcggagactaatcccttgaacattgtgagacctaaatggatggca 30785038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27763859 - 27763810
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27763859 caactgcggagactaatccctcgagcattgtgggactcaaatggacggca 27763810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8757482 - 8757441
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8757482 caactgcggagactaatccctcgagcattgtgggacccaaat 8757441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30995968 - 30996017
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  30995968 caactgcggagactaatccctcgagcattgtgggacccagatgggcggca 30996017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25224837 - 25224786
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    ||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  25224837 caactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaag 25224786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 38331266 - 38331215
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  38331266 caactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaag 38331215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 20861386 - 20861337
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  20861386 caactgcggagactaatccctcgagcattatggaacccaaatgggcggca 20861337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1642744 - 1642697
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacgg 48  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||||    
T  1642744 caactgcggaaactaatccctcaagtattgtgggacccaaatggacgg 1642697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 15446127 - 15446084
Alignment:
Q  8 ggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  15446127 ggagactaatccgtcgagcattgtgagacccaaatggacggcaa 15446084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48204314 - 48204365
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||||| ||||    
T  48204314 caactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaag 48204365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 55123235 - 55123192
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  55123235 caactgcgaagactaatccctcgagcattgtgagacccaaatgg 55123192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 15283200 - 15283159
Alignment:
Q  10 agactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  15283200 agactaatctctcgagcattgtgggacccaaatgggcggcaa 15283159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39950350 - 39950308
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatg 43  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||    
T  39950350 caactgcggagactaatccttcgagcattgtcggatccaaatg 39950308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42297445 - 42297494
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42297445 caactgcggagactaatccctcgagcattgtgagacccaaatggacggca 42297494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16756220 - 16756178
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16756220 caactgcggagactaatccctcgagcattgtgggacccaaatg 16756178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 49071715 - 49071666
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  49071715 caactgcggagactaatctctcgagcattgtgggacccaaatgaacggca 49071666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 15642593 - 15642543
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  15642593 caactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaa 15642543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 12035680 - 12035639
Alignment:
Q  9 gagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  12035680 gagactaatccctcgagcattgtgggacccaaatgggcggca 12035639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 36806749 - 36806700
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| |||||    
T  36806749 caactgcagagactaatccctcgagcattgtggaacccaaatgggcggca 36806700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 9780992 - 9781040
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggc 49  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  9780992 caactacggatactaatccctcgagcattgtgggacccaaatgggcggc 9781040  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 22022258 - 22022215
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  22022258 caactgcggagactaatccctcgaatattgtgggacccaaatgg 22022215  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 46864229 - 46864178
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    ||||||| |||||||||||||||| |||||||  ||||||||||||||||||    
T  46864229 caactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaag 46864178  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 44913246 - 44913196
Alignment:
Q  2 aactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||| |||||||||| |||||||||||||||||||| |||| |||||||    
T  44913246 aactgcagagactaatctctcgagcattgtgggacccagatgggcggcaag 44913196  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 28724806 - 28724761
Alignment:
Q  5 tgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||| |||||| |||| |||||||||||||    
T  28724806 tgcggagactaatccctcgaacattgtaggactcaaatggacggca 28724761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 6607700 - 6607739
Alignment:
Q  4 ctgcggagactaatccctcgagcattgtgggacccaaatg 43  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6607700 ctgcggagactaatccctcgagcattgtgagacctaaatg 6607739  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10367642 - 10367599
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||    
T  10367642 caactgcggagattaatccttcgagcattgttggacccaaatgg 10367599  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 18428145 - 18428178
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtggg 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  18428145 caactgcagagactaatccctcgagcattgtggg 18428178  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29059943 - 29059894
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  29059943 caactgcggagactaatccctcaagcattgtgggacccaaatgggcggca 29059894  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31492241 - 31492192
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  31492241 caactgcggagactaatccctcgagcattgtgggacctaaatgggcggca 31492192  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19477253 - 19477303
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  19477253 caactgcggagactaatccctc-agcattgtgggacccaaatggccggcaag 19477303  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28665228 - 28665187
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  28665228 caactgcggagactaatccctcgagcattgtgggaccaaaat 28665187  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37339736 - 37339777
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaat 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  37339736 caactgcggagactaatccctcgagcattatgggacccaaat 37339777  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20207635 - 20207584
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    ||||||||||||||||||||||||||||||| ||| |||||||  |||||||    
T  20207635 caactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaag 20207584  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21747043 - 21747086
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  21747043 caactgcgaagactaatccctcgaggattgtgggacccaaatgg 21747086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 14545070 - 14545032
Alignment:
Q  12 actaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggca 14545032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29428795 - 29428845
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    ||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  29428795 caactgcagagactaatccctcgaacattgtgggatccaaatggtcggcaa 29428845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31776556 - 31776513
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatgg 44  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||    
T  31776556 caactgcgaagattaatccctcgagtattgtgggacccaaatgg 31776513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45779002 - 45778956
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 47  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||    
T  45779002 caactgcggagactaatccctcgagtattgtgagactcaaacggacg 45778956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 13254117 - 13254153
Alignment:
Q  14 taatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||||||||| |||||| |||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggca 13254153  T

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Target: scaffold0182 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 26469 - 26420
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  26469 caactgcggagactaatctctcgaacattgtgggacccaaatgggcggca 26420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12836900 - 12836948
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggc 49  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  12836900 caactggggagactaatccctcaagcattgtgggacccaaatgggcggc 12836948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 9536905 - 9536858
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacgg 48  Q
    ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  9536905 caactgcggagactaatccctcgagcattgtggaatctaaatggacgg 9536858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 50
Target Start/End: Complemental strand, 423782 - 423744
Alignment:
Q  12 actaatccctcgagcattgtgggacccaaatggacggca 50  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  423782 actaatccctcgagcattgtgggactcaaatggacggca 423744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21028845 - 21028895
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    ||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaa 21028895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21028982 - 21029032
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    ||||||||||||||||||||| |||| |||||| |||||||||| ||||||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaa 21029032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 28099381 - 28099335
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacg 47  Q
    ||||||||||||||||||||||||||||| ||| || ||||||||||    
T  28099381 caactgcggagactaatccctcgagcattatggaactcaaatggacg 28099335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28933276 - 28933226
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||||||| |||| || |||||||||||||| |||||||||| ||||||    
T  28933276 caactgcggatactattcactcgagcattgtggaacccaaatgggcggcaa 28933226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12411286 - 12411237
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||| ||||||||||||||| |||||||||||||  |||||| |||||    
T  12411286 caactgtggagactaatccctcaagcattgtgggacttaaatgggcggca 12411237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 31412260 - 31412211
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggca 50  Q
    |||||| ||||||||||  |||||||||||||| |||||||||| |||||    
T  31412260 caactgtggagactaatttctcgagcattgtggaacccaaatgggcggca 31412211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 16065 - 16108
Alignment:
Q  8 ggagactaatccctcgagcattgtgggacccaaatggacggcaa 51  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  16065 ggagactaatccgtcgagcattgtgagacccaaatggacggcaa 16108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29155 - 29197
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatg 43  Q
    |||||| ||||||||||||| ||||||||||||||||||||||    
T  29155 caactgtggagactaatcccacgagcattgtgggacccaaatg 29197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27228 - 27279
Alignment:
Q  1 caactgcggagactaatccctcgagcattgtgggacccaaatggacggcaag 52  Q
    |||||||| ||||||||||||||||||| ||| || |||||||| |||||||    
T  27228 caactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaag 27279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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