View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5608_high_15 (Length: 258)
Name: NF5608_high_15
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_high_15 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 35293653 - 35293376
Alignment:
| Q |
1 |
atatagagatgtcctggtccttttccaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactgatagga |
100 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293653 |
atatagatatgtcctggaccttttctaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaactgatagga |
35293554 |
T |
|
| Q |
101 |
aaaggtaataccaccaatacatagctaatttt---------------------gtatggggactccaaaagtccttcatatccattcattatgttctacc |
179 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293553 |
aaaggtaataccaccaatacatagctaaatttacaatgtaggatactaaatttgtatggggactccaaaagtccttcatatccattcattatgttctacc |
35293454 |
T |
|
| Q |
180 |
aaaggaagtttattcgatcaaaagtcctttatatccattcatcatgttcaattgatgtccaagaatagctatggagtat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35293453 |
aaaggaagtttattcgatcaaaagtcctttatatccattcatcatgttcaattgatgtcc-agaatagctatggagtat |
35293376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 20717801 - 20717893
Alignment:
| Q |
1 |
atatagagatgtcctggtccttttccaggtcactagttcaaatgcatgatgcatgtattatctataagttgaagcccacatgtttctctaact |
93 |
Q |
| |
|
||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
20717801 |
atatagacaggtcctggtccttttctaggtcactagttcaaatgcaagatgcatgtcctatctataagttgaatcccacatatttctctaact |
20717893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 20717946 - 20718008
Alignment:
| Q |
125 |
ctaattttgtatggggactccaaaagtccttcatatccattcattatgttctaccaaaggaag |
187 |
Q |
| |
|
|||| |||| || |||||||||||||||||||||||||| |||| |||||| | ||||||||| |
|
|
| T |
20717946 |
ctaaatttgcattgggactccaaaagtccttcatatccactcatcatgttcgatcaaaggaag |
20718008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University