View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_1 (Length: 991)
Name: NF5608_low_1
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_1 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 363 - 801
Target Start/End: Original strand, 2045977 - 2046399
Alignment:
| Q |
363 |
gttgggacat-attcaatccccaaataagcttcaagttgatcttctctctatcgttcataattttaaaacgctagcgcaataaaggagcagaaatacgat |
461 |
Q |
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|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2045977 |
gttgggacatgattcaatcctcaaataagcttcgagttgatcttctctctatcgttcataattttaaaacgttagcgcaataaaggagcagaaatacgat |
2046076 |
T |
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| Q |
462 |
cactcatacgtacgcgtcttttcgctgttatacttcatattaacacacaagtttgttagagtacaattacttgaactagaaattaattggataagattga |
561 |
Q |
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| T |
2046077 |
cactcatacgtacgcatcttttcgctgttatacttcatattaacac--aagtttgttagactacatttacttgaactagaaattaattggataagattga |
2046174 |
T |
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| Q |
562 |
gttagttagagactgatcatatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaatacacacttgtatatatacc |
661 |
Q |
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| T |
2046175 |
gttagttagagactgatcacatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaatacacacttgtatatatacc |
2046274 |
T |
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| Q |
662 |
acaccggtttattcattcttatatctcattcttcttctataatcatcatctcacaaagtaatgtttaatttttcaatccaacatacaattgattttagtt |
761 |
Q |
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| T |
2046275 |
acacccgtttattcattcttatatctcattcttcttctataatcatcatctcacaaagtaatgt---------------aacatacaattgattttagtt |
2046359 |
T |
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| Q |
762 |
tttgtatttccaaatttgatatttccgtggaatatttgat |
801 |
Q |
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| T |
2046360 |
tttgtatttccaaatttgatatttccgtggaatatttgat |
2046399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 816 - 984
Target Start/End: Original strand, 2047499 - 2047677
Alignment:
| Q |
816 |
gaaatgtataaaaaggtgacgcgacctaaaacaatttaacatatctctttgtccatcaaactaataattatattttcaaaattccttttgaagtgtacac |
915 |
Q |
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| T |
2047499 |
gaaatgtataaaaaggtgacgcgacctaaaacaatttaacatatctctttgtccatcaaactaataattataactttaaaattccttttgaagtgtacac |
2047598 |
T |
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| Q |
916 |
tccactttg----------tatgggaggatagctacataccaaggtggagcagctaaacagctggaatgatgatgtcca |
984 |
Q |
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| T |
2047599 |
tccactttgtatgggaggatatgggaggatagctacataccaaggtggagcagctaaacagctggaatgatgatgtcca |
2047677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 2045737 - 2045835
Alignment:
| Q |
24 |
aaccgtgtttaatactatatcctttataacttttaaacatcttgttagtgaaataattcatcaaaaatattaaagagtatccttaggatattgtttaag |
122 |
Q |
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| T |
2045737 |
aaccgtgttttttactatatcctttataacttttaaacatcttgttagtgaaataactcatcaaaaatattaaagagtatccttaggatattgtttaag |
2045835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 2045898 - 2045981
Alignment:
| Q |
185 |
ctatgttctttaaaacaatattcatcaaactatttgcaatttcatatggagatgtctgaataacaaagatattcacttggttgg |
268 |
Q |
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| T |
2045898 |
ctatgttctttaaaacaatattcatgaaactatttgcaatttcatatggagaggtctgaataacaaagatattcacttggttgg |
2045981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 751 - 818
Target Start/End: Original strand, 2046399 - 2046466
Alignment:
| Q |
751 |
tgattttagtttttgtatttccaaatttgatatttccgtggaatatttgattttatggtccaaatgaa |
818 |
Q |
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| T |
2046399 |
tgattttagtttttgtatttccaaatttgatatttccgtggaatatttgattttatggttcaaatgaa |
2046466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 122
Target Start/End: Original strand, 2052558 - 2052631
Alignment:
| Q |
48 |
tataacttttaaacatcttgttagtgaaataattcatcaaaaatattaaagagtatccttaggatattgtttaag |
122 |
Q |
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| T |
2052558 |
tataacttttaaacatcttgttagttaaataatttatgaaaaatattaaaaagt-gccttatgatatcgtttaag |
2052631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 506 - 569
Target Start/End: Original strand, 23509223 - 23509286
Alignment:
| Q |
506 |
acacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtta |
569 |
Q |
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| T |
23509223 |
acacaaatttgctagagtttaattacgtgaactagaagttagttggataagattgagttagtta |
23509286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 46939 - 46899
Alignment:
| Q |
415 |
gttcataattttaaaacgctagcgcaataaaggagcagaaa |
455 |
Q |
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| T |
46939 |
gttcataattttaaaacgttagcgcaataaaagagcagaaa |
46899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 15044157 - 15044116
Alignment:
| Q |
414 |
cgttcataattttaaaacgctagcgcaataaaggagcagaaa |
455 |
Q |
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| T |
15044157 |
cgttcataattttcaaacgttagcgcaataaaagagcagaaa |
15044116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 507 - 568
Target Start/End: Complemental strand, 35987850 - 35987789
Alignment:
| Q |
507 |
cacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtt |
568 |
Q |
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| T |
35987850 |
cacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagtt |
35987789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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