View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_10 (Length: 320)
Name: NF5608_low_10
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 23232485 - 23232179
Alignment:
| Q |
1 |
tgttagtggtaatgcaaaatatataccatgcatatatatagtttggcacttcccaattattattttcaaagctaataaaaca---tgatttctcattcct |
97 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23232485 |
tgttagtggtaatccaaaatatataccatgcatatatatagtttggcacttcccaattattattttcaaagctaataaaacaagatgatttctcattcct |
23232386 |
T |
|
| Q |
98 |
tcttattagctatgattgtgctccttcttcttgtccttctcccacttttctccttctttaagagaaacaagaaatcacaaccacatttacccctccctcc |
197 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232385 |
tcttattagctatgattgtgctccttcttcttttccttctcccacttttctccgtctttaagagaaacaagaaatcacaaccacatttacccctccctcc |
23232286 |
T |
|
| Q |
198 |
aagtccaccaacaataccagtaattggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttata |
297 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232285 |
aagtccaccaacaataccaataattggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacctcttata |
23232186 |
T |
|
| Q |
298 |
tcccttc |
304 |
Q |
| |
|
||||||| |
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| T |
23232185 |
tcccttc |
23232179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 23224958 - 23224846
Alignment:
| Q |
192 |
ccctccaagtccaccaacaataccagtaattggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctgagcgatatggacct |
291 |
Q |
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|
|||||||||||||| | |||||||| ||||||| |||||||||||||| ||||| || ||||||| ||||| |||||||||||||| ||||||||||| |
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| T |
23224958 |
ccctccaagtccactagcaataccaataattggtcatcttcatctcctcaaacccctcgttcatcaagcctttcgcgacctctctgatcgatatggaccc |
23224859 |
T |
|
| Q |
292 |
cttatatcccttc |
304 |
Q |
| |
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||||||||||||| |
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| T |
23224858 |
cttatatcccttc |
23224846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 82 - 304
Target Start/End: Original strand, 48591928 - 48592153
Alignment:
| Q |
82 |
atgatttctcattccttcttattagctatgattgtgctccttcttcttgtccttctcccacttttctccttctttaagagaaacaagaaatcacaaccac |
181 |
Q |
| |
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|||||||| |||||||||| ||||||||||||| ||||||| ||||| || || | | ||| |||| | ||| |||||||||||||| | || ||| |
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| T |
48591928 |
atgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcac |
48592027 |
T |
|
| Q |
182 |
atttacc-cctc--cctccaagtccaccaacaataccagtaattggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctga |
278 |
Q |
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||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||| ||||| ||| ||||||| || |
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| T |
48592028 |
gattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccga |
48592127 |
T |
|
| Q |
279 |
gcgatatggacctcttatatcccttc |
304 |
Q |
| |
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| |||||| ||| | |||||||||| |
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|
| T |
48592128 |
tcaatatggccctttaatatcccttc |
48592153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 82 - 304
Target Start/End: Original strand, 48601623 - 48601848
Alignment:
| Q |
82 |
atgatttctcattccttcttattagctatgattgtgctccttcttcttgtccttctcccacttttctccttctttaagagaaacaagaaatcacaaccac |
181 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| ||||||| ||||| || || | | ||| |||| | ||| |||||||||||||| | || ||| |
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| T |
48601623 |
atgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcac |
48601722 |
T |
|
| Q |
182 |
atttacc-cctc--cctccaagtccaccaacaataccagtaattggacatcttcatctccttaaaccacttattcatcatgccttccgcgacctctctga |
278 |
Q |
| |
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||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |||||||| ||||| ||| ||||||| || |
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| T |
48601723 |
gattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctcctcaaaccactcattcatcaggcctttcgccacctctccga |
48601822 |
T |
|
| Q |
279 |
gcgatatggacctcttatatcccttc |
304 |
Q |
| |
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| |||||| ||| | |||||||||| |
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|
| T |
48601823 |
tcaatatggccctttaatatcccttc |
48601848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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