View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_16 (Length: 255)
Name: NF5608_low_16
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 27721886 - 27721838
Alignment:
| Q |
131 |
gaaggtacaaaattctgtgcagtttcaaaagaactgcacaggggttgtt |
179 |
Q |
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| T |
27721886 |
gaaggtataaaattctgtgcagtttcaaaagaactgcacaggggttgtt |
27721838 |
T |
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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 27721842 - 27721807
Alignment:
| Q |
207 |
ttgtttgttattgaggaagaacaacgtgtgatgatg |
242 |
Q |
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| T |
27721842 |
ttgtttgttattgaggaagaacaacgtgtgatgatg |
27721807 |
T |
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