View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5608_low_17 (Length: 254)
Name: NF5608_low_17
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_17 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 35294002 - 35293752
Alignment:
| Q |
18 |
accttagaagcttcagcagataccatggcaatgagcatggctagaaagaagaacataatccatgacttgaagtttaacattttagataatatgggtaagg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35294002 |
accttagaagcttcagcagataccatggcaatgagcatggctagaaagaagaacataatccatgacttgatgtttaacattttagataatatgggtaagg |
35293903 |
T |
|
| Q |
118 |
taatgaaacttttttgtttgtttgaaatgtagagagaataga--------------gaattgcctttgcctctacccttcttgatagaagtgggaaatag |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293902 |
taatgaaacttttttgtttgtttgaaatgtagagagaatagagaatagagaatagagaattgcctttgcctctacccttcttgatagaagtgggaaatag |
35293803 |
T |
|
| Q |
204 |
gaggataaaatagtatgcaagttagaaattaggttgttgtgttatttgtga |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35293802 |
gaggataaaatagtatgcaagttagaaattaggttgttgtgttatttgtga |
35293752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 20717066 - 20717197
Alignment:
| Q |
21 |
ttagaagcttcagcagataccatggcaatgagcatggctagaaagaagaacataatccatgacttgaagtttaacattttagataatatgggtaaggtaa |
120 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20717066 |
ttagaagctttagcagataccatggcgatgaccatggctaggaagaagaacataagccatggcttgaagtttatcattttagataatatgggtaaggtat |
20717165 |
T |
|
| Q |
121 |
tgaaacttttttgtttgtttgaaatgtagaga |
152 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| |
|
|
| T |
20717166 |
tgagactttgttgtttgtttgaaatgtagaga |
20717197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University