View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_18 (Length: 253)
Name: NF5608_low_18
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 3112710 - 3112582
Alignment:
| Q |
112 |
atagttttcaaattatatcatcatataactaaattgaattcaaccnnnnnnntaacaagctgatctcagttatagaacacttaagaagagaagtaatgaa |
211 |
Q |
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| T |
3112710 |
atagttttcaaattatattatcatataactaaattgaaatcaaccaaaaaaataacaagctgatctcagttatagaacacttaagaagagaagtaatcaa |
3112611 |
T |
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| Q |
212 |
tgtcatgttttgtaccaaattaatgtcct |
240 |
Q |
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| T |
3112610 |
tgtcatgttttgtaccaaattaatgtcct |
3112582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 26268326 - 26268435
Alignment:
| Q |
117 |
tttcaaattatatcatcatataactaaattgaattcaaccnnnnnnntaacaagctgatctcagttatagaacacttaagaagagaagtaatgaatgtca |
216 |
Q |
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| T |
26268326 |
tttcaaagtatatcatcatattactaaattgaaattaaccaaaaaaataacaagatgatctcaattatagaacac-taagaaaagaagcaatcaatgcaa |
26268424 |
T |
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| Q |
217 |
tgttttgtacc |
227 |
Q |
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| T |
26268425 |
tattttgtacc |
26268435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 3112750 - 3112710
Alignment:
| Q |
53 |
tattattttgtcttgtcttgtgttgttctattcagttcaaa |
93 |
Q |
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| T |
3112750 |
tattattttgtcttgtcttgtgtcgttctattccgttcaaa |
3112710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35473107 - 35473162
Alignment:
| Q |
1 |
aaaattatttaatacaataaaagtttgtcatatgtcgttctaccttatattgtatt |
56 |
Q |
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| T |
35473107 |
aaaattatttaataccatcaaaatttgtcatatgttgttctaacttgtattgtatt |
35473162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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