View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_19 (Length: 250)
Name: NF5608_low_19
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 23232473 - 23232713
Alignment:
| Q |
4 |
attaccactaacatcttttatagtatgtacatgcgttgacatttgcaatcaaagaaatcttttcaaaaattgtaggtgcatcttggtagagaagatatga |
103 |
Q |
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| T |
23232473 |
attaccactaacatcttttatagtatgtacatgcgttgacatttgcaatcaaagaaatcttttcaaaaattgtaggtgcatcttggtagagaagataaca |
23232572 |
T |
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| Q |
104 |
taatgaagaaaaactttaaaaggaacattcatatgtaggctgcgtgt-attaattagagtttgaaaaacgtaaggatcgcttgacattttaaaaagctgg |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23232573 |
taatgaagaaaaactttaaaaggaacattcatatgtaggctgcgtgtaattaattagagtttgaaaaacgtaaggatcgcttgacattttaaaaagctgg |
23232672 |
T |
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| Q |
203 |
ttgggtaggtagggacgtgatatcccactaatagaattatc |
243 |
Q |
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||||||| |||||||||||||||||||||||||| |||||| |
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| T |
23232673 |
ttgggtacgtagggacgtgatatcccactaataggattatc |
23232713 |
T |
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