View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_2 (Length: 658)
Name: NF5608_low_2
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 650
Target Start/End: Original strand, 42335984 - 42336615
Alignment:
| Q |
19 |
cacaaaaccaacgtgtgtgttaaatgttgtaaggacaaaacaaaaagaggaaccatatacaaaccttctttccaaagattttcttccccttcaaaggtgg |
118 |
Q |
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| T |
42335984 |
cacaaaaccaacttgtgtgttaaatgttgtaaggacaaaacaaaaagaggaaccata--caaaccttctttccaaagattttcttccccttcgaaggtgg |
42336081 |
T |
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| Q |
119 |
tggggctagagttttcgaagtagccgatggaggtgagtttccttgagttggactgggtggagatctttgaggagatgatgccggtggattgattgctgga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||| |
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| T |
42336082 |
tggggctagagttttcgaagtagccgatggaggtgagtttccttgagttggactgggtggagatctttgaggagatggtgccgatggattggtgactgga |
42336181 |
T |
|
| Q |
219 |
gcaggtgcattatggttggaaggagatggagcgggggctggtgtcggagatgaaagtggcgatggtgaaggtgcatgtgagggagggttggaaggagatg |
318 |
Q |
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| T |
42336182 |
gcaggtgcattatggttggaagtagatggagcgggggctggtgtcggagatgaaagtggcgatggtgaaggtgcatgtgagggagggttggaaggagatg |
42336281 |
T |
|
| Q |
319 |
gggccggtgaagtgctagcgggggctggtgttggagatgaaaatggggccggtgaaggcgcgttagggttaggagatggggctggtgatgtgggagatga |
418 |
Q |
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| T |
42336282 |
gggccggtgaagtgctagcgggggctggtgttggagatgaaaatggggccggtgaaggcgcattagggttaggagatggggttggtgatgtgggagatga |
42336381 |
T |
|
| Q |
419 |
agctggagaagacccagcaggggctggtgccggtgaaggcgactggcctccgacaccggcgataacaatgcagatgaatgcaagagagaacacaatgttg |
518 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336382 |
agctggagaagaaccagcgggggctggtgccggtgaaggcgactggcctacgacaccggcgataacaatgcagatgaatgcaagagagaacacaatgttg |
42336481 |
T |
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| Q |
519 |
agattcattttgaaaattgaaaacaaggtgnnnnnnnnnnnngtttgctagggttgcaatgtgatgataaaaggcttatacttgatagtat--tatatag |
616 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
42336482 |
agattcattttgaaaattgaaaacaaggtgtttttcttttttgtttgctagggttgcaatgtgatgatgaaaggcttatacttgatagtattatatatag |
42336581 |
T |
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| Q |
617 |
gactttgttcttatttgatttcacgctgatgatg |
650 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
42336582 |
gactttgctcttatttgatttcacgctgatgatg |
42336615 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 510
Target Start/End: Complemental strand, 19792394 - 19792346
Alignment:
| Q |
462 |
tggcctccgacaccggcgataacaatgcagatgaatgcaagagagaaca |
510 |
Q |
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| T |
19792394 |
tggcctctgacagcggcgacaacaatgcagatgagtgcaaaagagaaca |
19792346 |
T |
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