View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_3 (Length: 493)
Name: NF5608_low_3
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 224 - 478
Target Start/End: Complemental strand, 40359876 - 40359616
Alignment:
| Q |
224 |
atgaatcagaagaattagaccacaacacatggttgtctttgttcattatgtgaaatgcctagtac-acatttttctctggttctagcta----tgatgta |
318 |
Q |
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| T |
40359876 |
atgaatcagaagaatcagaccacaacacatggttgtctttgttcattatgtgaaatgcctagtactacatttttctctggttctagctagctatgatgta |
40359777 |
T |
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| Q |
319 |
catatcttcatgtaaactagttgttgagccatttactacatatagggcatgatccaaatcataacaaatgtttgttgtctgttaattaattgtaatgtat |
418 |
Q |
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| T |
40359776 |
catatcttcatgtaaactagttgttgagccatttactacatatagggcatgatccaaatcataacaaatgtttgttgtctgttaattaattgtaatgtat |
40359677 |
T |
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| Q |
419 |
atagtttgtaagaatgaaaatcataccaca-ttcatggtttgtggttctagctttgatcct |
478 |
Q |
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| T |
40359676 |
atagtttgtcagaatgaaaatcataccacatttcatggtttgtggttctagctttgatcct |
40359616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 40360058 - 40359870
Alignment:
| Q |
19 |
cacagaagccgtcttgttgctgcaaaagcagcaaattgatcatatactatatgatattattacttgctacgtactaggtattagaagaatgaagcagctt |
118 |
Q |
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| T |
40360058 |
cacagaagccgtcttgttgctgcaaaagcagcaaattgatcata--ctatatgatattattacttgctacgtactaggtattagaagaatgaagcagctt |
40359961 |
T |
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| Q |
119 |
gtaataatttcatttttctccctc--nnnnnnnnnnctattactttttagccatttttggcttgtttaatcgattcaattccttatgaatc |
207 |
Q |
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| T |
40359960 |
gtaataatttcatttttctccctcttttttttttttctattactttttagccatttttggcttgtttaatcgattcaattccttatgaatc |
40359870 |
T |
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