View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_4 (Length: 462)
Name: NF5608_low_4
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 29690940 - 29690497
Alignment:
| Q |
1 |
ggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690940 |
ggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaac |
29690841 |
T |
|
| Q |
101 |
ggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690840 |
ggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcag |
29690741 |
T |
|
| Q |
201 |
agaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690740 |
agaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcag |
29690641 |
T |
|
| Q |
301 |
ttacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaacgagagatagagaattgaagttgatttgagatgattttatgataat |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29690640 |
tgacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaacgagagatagagaattgaagttgatttgagatgattttatgataat |
29690541 |
T |
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| Q |
401 |
ctcccaacaatcgtcaggtaaatatgattctgaagttctcttct |
444 |
Q |
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| T |
29690540 |
ctcccaacaatcgtcaggtaaatatgattctgaagttctcttct |
29690497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 29718452 - 29718009
Alignment:
| Q |
1 |
ggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718452 |
ggtcgaggtgtttgagcaaagggaaacaatgagcaacgggtaagagctggctgtgaacaaaagaagcacgggaacaagtgagagaggtcaatgttgtaac |
29718353 |
T |
|
| Q |
101 |
ggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcag |
200 |
Q |
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| T |
29718352 |
ggtttggcagaatgcgagcaagccatctgctggaaagggggtagggacagggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcag |
29718253 |
T |
|
| Q |
201 |
agaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718252 |
agaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtgaggttggtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcag |
29718153 |
T |
|
| Q |
301 |
ttacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaacgagagatagagaattgaagttgatttgagatgattttatgataat |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718152 |
tgacggagagtgaaaaccgaagacgattagtgatggagaggatttgttttgaaacgagagatagagaattgaagttgatttgagatgattttatgataat |
29718053 |
T |
|
| Q |
401 |
ctcccaacaatcgtcaggtaaatatgattctgaagttctcttct |
444 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29718052 |
ctcccaacaatcgtcaggtaaatatgattctgaagttctcttct |
29718009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 149 - 284
Target Start/End: Original strand, 30827877 - 30828014
Alignment:
| Q |
149 |
agggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgta--gcgggagaggtcgagggaag |
246 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| |||||| |||||| |||| || ||| ||||| | |||||||||||||||| | |
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| T |
30827877 |
agggagtttgagtgatgtgagttgtttcaatgggaaattagagattttgatgagaagttcgtcgagtggatacttgtatagtgggagaggtcgagggagg |
30827976 |
T |
|
| Q |
247 |
tgaggttggtgaaccttttcaagagacgagggaggtaa |
284 |
Q |
| |
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|||| |||||||||||||| ||||||||||| |||||| |
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| T |
30827977 |
tgagattggtgaaccttttgaagagacgaggaaggtaa |
30828014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 150 - 375
Target Start/End: Original strand, 33161277 - 33161499
Alignment:
| Q |
150 |
gggagtttgagtgatgtgagttttttcaatgggaagttagatattttgcagagaagatcgttcggtaaatagttgtagcgggagaggtcgagggaagtga |
249 |
Q |
| |
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|||||||||||||||| |||||| ||||||||| ||| | ||||||| |||||| || | || |||| ||| |||||||||| ||||| |||| |
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| T |
33161277 |
gggagtttgagtgatgagagttt---caatgggaaattatagattttgcggagaagctcatctagttcatagccatagtgggagaggtcaagggaggtga |
33161373 |
T |
|
| Q |
250 |
ggttggtgaaccttttcaagagacgagggaggtaatgacgtgatgcatcagttacggagagtgaaaaccgaagacgattagtgatggagaggatttgttt |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||| || | ||| || | | | || |||||| || ||||||| ||||||||||||||| | ||||| |
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| T |
33161374 |
ggttggtgaaccttttcaagagacgagggaggaaagggtgtgttgagtttttgagggtgagtgagaatcgaagactattagtgatggagagaaactgttt |
33161473 |
T |
|
| Q |
350 |
tgaaacgagagatagagaattgaagt |
375 |
Q |
| |
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|| ||||| ||||||||||| |||| |
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| T |
33161474 |
ggagacgagggatagagaattcaagt |
33161499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 6427344 - 6427394
Alignment:
| Q |
231 |
gagaggtcgagggaagtgaggttggtgaaccttttcaagagacgagggagg |
281 |
Q |
| |
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|||||||||||||| ||||||| ||||||||||| |||||| |||||||| |
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| T |
6427344 |
gagaggtcgagggaggtgaggtgtgtgaaccttttgaagagaagagggagg |
6427394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 1524211 - 1524174
Alignment:
| Q |
237 |
tcgagggaagtgaggttggtgaaccttttcaagagacg |
274 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
1524211 |
tcgagggaagtgaggttggtgaacctttggaagagacg |
1524174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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