View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5608_low_5 (Length: 451)
Name: NF5608_low_5
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 40642047 - 40641612
Alignment:
| Q |
1 |
tttcagtataaaccagcattcaaatttttcagcatttacttcaaattgtaagtttcaaagagattttcacatcaaaccagagggaacaccaagaaaaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40642047 |
tttcagtataaaccagcattcaaatttttcggcatttactccaaattgtaagtttgaaagagattttcacatcaaaccagagggaacaccaagaaaaatc |
40641948 |
T |
|
| Q |
101 |
cattttcactaaaattctaggttgcctttggaaaatagtataaagccttgtctaaattttaattttagtgcttaaggaatacacannnnnnncaaaggtg |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
40641947 |
catcttcactaaaattctaggttgcctttggaaaatagtataaagccttgtctaaattttaattttagtgcttaaggaatatacatttttttcaaaggtg |
40641848 |
T |
|
| Q |
201 |
acctagataattaaaatttctgtattcnnnnnnntaatcccttatagtaaactttcagaaaagataaaatcatcttctaataaaattaaggatgtgaaca |
300 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40641847 |
acctagataattatgatttctgtattcaaaaaaataatcccttatagtaaactttcagaaaagataaaatcatcttctaataaaattaaggatgtgaaca |
40641748 |
T |
|
| Q |
301 |
aatagttatctttttggtaacaaattgctatctgaatcccttatatgcatttcataaaaggttttaactaatcagaatcaagattaagaagaggttcccc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
40641747 |
aatagttatctttttggtaacaaattgctatctgaatcccttatgtgcatttcataaaaggttttaactaatcagagtcaagattaagaaaaggttcccc |
40641648 |
T |
|
| Q |
401 |
tcnnnnnnnggttaagctatgtttggattgatgaaa |
436 |
Q |
| |
|
|| ||||||||| ||||||||||||||||| |
|
|
| T |
40641647 |
tcaaaaaaaggttaagctctgtttggattgatgaaa |
40641612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University