View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5608_low_6 (Length: 447)
Name: NF5608_low_6
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5608_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 4 - 429
Target Start/End: Original strand, 6207878 - 6208303
Alignment:
| Q |
4 |
atgtcgaagaatatgcagcaatcagaaaatttatcattcgtgtctttatatacattgtcgtcaattgagtagtcaaaacattaagattatttatatttta |
103 |
Q |
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| T |
6207878 |
atgtggaagaatatgcagcaatcagaaaatttatcattcgtgtctttatatacattgtcgtcaattgagtaatcaaaatattaagattatttatatttta |
6207977 |
T |
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| Q |
104 |
tggtgaaaactctatttattagtcacaatataattttaagtatgtttttgggaccaattctatggagcacaaataaaaatatatcgtgattttttatcca |
203 |
Q |
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| T |
6207978 |
tggtgaaaactctatttattagtcacaatataatttcaagtatgtttttgggaccaattctatggagcacaaataaaaatatatcgtgattttttatcca |
6208077 |
T |
|
| Q |
204 |
atgatagaaaagatatttgtacatggtacaagattattttgtttgtgtatgctaataaaacatgtttttggtacttgaccnnnnnnnntgtttttggtct |
303 |
Q |
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| T |
6208078 |
atgatagaaaagatatttgtacatggtataagattattttgtttgtgtatgctaataaaacatgtttttggtacttgaccaaaaaaaatgtttttggtct |
6208177 |
T |
|
| Q |
304 |
ctctaatattagacctctatatatgtctggtcctacaagtacaagttagatctcaaaatgctgaggaagaacatatgtctttaaacgcaagttagcatgt |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
6208178 |
ctctaatattagacctctatatatgtctggtcctacaagtacaagttagatctcaaaatgccgacgaagaacatatatctttaaacgcaagttagcatgt |
6208277 |
T |
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| Q |
404 |
cccatacaaaaattacgactaagaac |
429 |
Q |
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|||||||||||||||||||||||||| |
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| T |
6208278 |
cccatacaaaaattacgactaagaac |
6208303 |
T |
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