View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5608_low_7 (Length: 346)

Name: NF5608_low_7
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5608_low_7
NF5608_low_7
[»] chr1 (3 HSPs)
chr1 (1-328)||(31321972-31322304)
chr1 (223-328)||(31321342-31321447)
chr1 (253-326)||(34650817-34650890)
[»] chr8 (4 HSPs)
chr8 (222-328)||(2687466-2687573)
chr8 (274-326)||(27166985-27167037)
chr8 (237-325)||(27824119-27824207)
chr8 (280-325)||(17097344-17097389)
[»] chr5 (5 HSPs)
chr5 (223-325)||(37498509-37498611)
chr5 (246-328)||(13163522-13163603)
chr5 (244-325)||(38997640-38997722)
chr5 (268-328)||(28804052-28804111)
chr5 (254-325)||(37497526-37497596)
[»] chr4 (4 HSPs)
chr4 (144-227)||(42602474-42602557)
chr4 (32-104)||(42602141-42602213)
chr4 (274-325)||(7500711-7500762)
chr4 (263-325)||(8332215-8332277)
[»] chr7 (3 HSPs)
chr7 (262-328)||(3697878-3697944)
chr7 (232-317)||(28686785-28686870)
chr7 (280-328)||(35711282-35711330)
[»] chr6 (1 HSPs)
chr6 (222-328)||(28636113-28636220)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 31321972 - 31322304
Alignment:
Q  1 tgtacagaggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatcttc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31321972 tgtacaggggttgataaaataaaaccaatcaaaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaaaaatacatcttc 31322071  T
Q  101 aacataacacttttcctaat---ctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattattctgccataacaacaattgta 197  Q
    ||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31322072 aacataacacttttccttattatctccctatcaagcatctcctctatccaaccttgcctcaatttgttccacttattgttctgccataacaacaattgta 31322171  T
Q  198 ggattggtgttacgaatgagaaccaaaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatc--tatatgtgaatttatagcagaa 295  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  31322172 ggattggtgttacgaatgagaaccaaaaagaaccatgcttttgtggaaatcatgagaattttacagttttatgatctatatatgtgaatttatagcagaa 31322271  T
Q  296 atggaggatatgggtagaagaaatggtgaaggt 328  Q
    |||||||||||||||||||||||||||||||||    
T  31322272 atggaggatatgggtagaagaaatggtgaaggt 31322304  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 31321447 - 31321342
Alignment:
Q  223 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 322  Q
    ||||||||||| |||||||| |||||| || ||||||| ||||||||||||||| |||||| || || ||||||||||||||||||||||| ||||||||    
T  31321447 aaaagaaccatgcttttgtgaaaatcacgaaaattttatagttttatgatctatctgtgaaattttaacagaaatggaggatatgggtagacgaaatggt 31321348  T
Q  323 gaaggt 328  Q
    ||||||    
T  31321347 gaaggt 31321342  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 34650890 - 34650817
Alignment:
Q  253 gaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaag 326  Q
    ||||||||| || |||||||| || | ||||||| ||||||||||  ||| |||||||||||||||||||||||    
T  34650890 gaattttacggtattatgatcaatctatgaatttttagcagaaataaagggtatgggtagaagaaatggtgaag 34650817  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 222 - 328
Target Start/End: Complemental strand, 2687573 - 2687466
Alignment:
Q  222 aaaaagaaccatactttt-gtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatg 320  Q
    |||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||    |||||    
T  2687573 aaaaagaaccatgctttttgtgaaaatcatgggaattttacagttttatgatctatgtatgaatttttagcagaaatggaggatatgggtattgaaaatg 2687474  T
Q  321 gtgaaggt 328  Q
    ||||||||    
T  2687473 gtgaaggt 2687466  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 27166985 - 27167037
Alignment:
Q  274 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaag 326  Q
    ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||    
T  27166985 tatatatgaatttttagcataaatggaagatatgggtagaagaaatggtgaag 27167037  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 27824119 - 27824207
Alignment:
Q  237 tttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 325  Q
    ||||| || ||||||||||||||| ||| ||||||||||| |||||||||  || |||| | || |||||| |||||| ||||||||||    
T  27824119 tttgtagatatcatgagaattttaaagtattatgatctatttgtgaattttcagtagaattcgaagatatgagtagaataaatggtgaa 27824207  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 17097389 - 17097344
Alignment:
Q  280 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 325  Q
    ||||||| |||||  |||||||||||||||||||||||||| ||||    
T  17097389 tgaatttttagcatgaatggaggatatgggtagaagaaatgttgaa 17097344  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 325
Target Start/End: Original strand, 37498509 - 37498611
Alignment:
Q  223 aaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggt 322  Q
    ||||||| |||  ||||||| |||||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||| || | |||||||||||||    
T  37498509 aaaagaagcatgtttttgtgaaaatcatgggaattttacagttttatgatctatttgtgaatttttagcataaatggaggacatagctagaagaaatggt 37498608  T
Q  323 gaa 325  Q
    |||    
T  37498609 gaa 37498611  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 246 - 328
Target Start/End: Original strand, 13163522 - 13163603
Alignment:
Q  246 atcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggt 328  Q
    |||||| |||||||| ||||||||||||||||||||||||| ||||| | ||||||||||| ||||||| |||| ||||||||    
T  13163522 atcatgtgaattttaaagttttatgatctatatgtgaatttttagcaaatatggaggatataggtagaa-aaattgtgaaggt 13163603  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 38997722 - 38997640
Alignment:
Q  244 aaatcatgagaattttacagttttatgatctatatgtgaatttat-agcagaaatggaggatatgggtagaagaaatggtgaa 325  Q
    |||||||  |||||| ||| ||||||||||||||||||| ||| | ||||||||| |||||||| ||||||||||||||||||    
T  38997722 aaatcatcggaatttgacaattttatgatctatatgtgatttttttagcagaaatcgaggatataggtagaagaaatggtgaa 38997640  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 28804111 - 28804052
Alignment:
Q  268 atgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggt 328  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||||||||||||||||||    
T  28804111 atgatctctttgtgaatttttgacagaaatgg-ggatatgggtagaagaaatggtgaaggt 28804052  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 37497596 - 37497526
Alignment:
Q  254 aattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 325  Q
    |||||||| | ||||||||||||  ||||| || ||||| ||||||| ||||||| ||||||||||||||||    
T  37497596 aattttacggctttatgatctatcggtgaaatt-tagcataaatggatgatatggatagaagaaatggtgaa 37497526  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 42602474 - 42602557
Alignment:
Q  144 tccaaccttgcctcaatttgttccacttattattctgccataacaacaattgtaggattggtgttacgaatgagaaccaaaaag 227  Q
    ||||||||||||||| | |||||| ||| ||  |||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  42602474 tccaaccttgcctcattgtgttccgcttcttgctctgccataacaacaattgtaggattggtgctacgaatgaggcccaaaaag 42602557  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 42602141 - 42602213
Alignment:
Q  32 aaagcaagtgtttttgctccttccttctcctacttctgaacaccataattatcacaagaatacatcttcaaca 104  Q
    |||| ||||| | |||||||||||| ||||| |||||||||||  |||||||||||||||||||| |||||||    
T  42602141 aaagtaagtgctgttgctccttcctgctcctgcttctgaacactgtaattatcacaagaatacattttcaaca 42602213  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 7500711 - 7500762
Alignment:
Q  274 tatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 325  Q
    |||||||| |||| |||||  ||||||||||||||||||||||||| |||||    
T  7500711 tatatgtggatttttagcatgaatggaggatatgggtagaagaaatagtgaa 7500762  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 8332215 - 8332277
Alignment:
Q  263 gttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaa 325  Q
    |||||||||  ||| ||||||||| ||||||||||||  ||||||| ||||||||||| ||||    
T  8332215 gttttatgacatatttgtgaatttttagcagaaatggtcgatatggatagaagaaatgatgaa 8332277  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 3697944 - 3697878
Alignment:
Q  262 agttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggt 328  Q
    ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||| ||||||||    
T  3697944 agttttatgatctatctgtgaatttttagcagaaatggacgatatgggtagaataaatagtgaaggt 3697878  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 28686870 - 28686785
Alignment:
Q  232 atacttttgtggaaatcatgagaattttacagttttatgatctatatgtgaatttatagcagaaatggaggatatgggtagaagaa 317  Q
    ||||||||| ||||||||||  |||||||||||||||||||| || || ||||||  |||  |||||| ||||||| |||||||||    
T  28686870 atacttttgaggaaatcatggaaattttacagttttatgatccatctgcgaattttcagctaaaatgggggatatgagtagaagaa 28686785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 35711282 - 35711330
Alignment:
Q  280 tgaatttatagcagaaatggaggatatgggtagaagaaatggtgaaggt 328  Q
    ||||||| |||||||||||||||| |||| ||||||||| |||||||||    
T  35711282 tgaatttttagcagaaatggaggaaatggatagaagaaacggtgaaggt 35711330  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 328
Target Start/End: Original strand, 28636113 - 28636220
Alignment:
Q  222 aaaaagaaccatacttttgtggaaatcatgagaattttacagttttatgatctatat--gtgaatttatagcagaaatggaggatatgggtagaagaaat 319  Q
    ||||| ||| |||||||||||||||||||| |||||||| ||||||||||| ||| |   |   ||| ||||| ||||||||||| |||||| |||||||    
T  28636113 aaaaaaaactatacttttgtggaaatcatgggaattttatagttttatgatttatgttattttttttttagcaaaaatggaggat-tgggtaaaagaaat 28636211  T
Q  320 ggtgaaggt 328  Q
    |||||||||    
T  28636212 ggtgaaggt 28636220  T

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