View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5608_low_8 (Length: 341)

Name: NF5608_low_8
Description: NF5608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5608_low_8
NF5608_low_8
[»] chr2 (4 HSPs)
chr2 (16-327)||(13536594-13536918)
chr2 (222-327)||(11033218-11033322)
chr2 (255-327)||(8267350-8267421)
chr2 (222-324)||(20511689-20511789)
[»] chr1 (5 HSPs)
chr1 (224-327)||(4941612-4941715)
chr1 (241-327)||(23288554-23288640)
chr1 (241-327)||(40777910-40777995)
chr1 (250-326)||(46149892-46149969)
chr1 (285-325)||(3167362-3167402)
[»] chr4 (3 HSPs)
chr4 (222-327)||(22851328-22851433)
chr4 (222-327)||(27572450-27572555)
chr4 (224-325)||(9363352-9363453)
[»] chr7 (2 HSPs)
chr7 (255-327)||(35759243-35759315)
chr7 (250-327)||(2746809-2746886)
[»] chr8 (3 HSPs)
chr8 (256-327)||(12722347-12722417)
chr8 (257-327)||(1214215-1214285)
chr8 (222-327)||(28430128-28430234)
[»] chr5 (1 HSPs)
chr5 (250-327)||(41732361-41732438)
[»] chr6 (1 HSPs)
chr6 (222-326)||(24209321-24209425)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 13536594 - 13536918
Alignment:
Q  16 atacaactttattaattagtaattcaatagacatgttaagaaatcatatactcacttttatttttgaattagattttgagtgttcaaggagaccaatgat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13536594 atacaactttattaattagtaattcaatagacatgttaagaaatcatatactcacttttatttttgaattagattttgagtgttgaaggagaccaatgat 13536693  T
Q  116 aatacataaactgagtctatatacaaatactaagcttcaagaaacaactaatttccatgg-nnnnnnntat------------atgcaagattcaagaga 202  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||        |||            |||||||||||||||||    
T  13536694 aatacataaactgagtctatatataaataataagcttcaagaaacaactaatttccatggaaaaagaatatataagatacttcatgcaagattcaagaga 13536793  T
Q  203 accactaaactggagacaaggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaatt 302  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||||| | |||||| |||| ||||||| ||||| ||||||||||||    
T  13536794 accactaaactggagacagggccggcctaaggaccaaacaacctaaacaagggttttaggcttcaaaacttttggtaaaaaaaaaggtctttaaaaaatt 13536893  T
Q  303 aatttgatcataagtatattatatg 327  Q
    |||||| ||||||||||||||||||    
T  13536894 aatttggtcataagtatattatatg 13536918  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Complemental strand, 11033322 - 11033218
Alignment:
Q  222 ggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatat 321  Q
    ||||||| ||||| |||| ||| | || |||| | ||||| ||||||||||||  || |||| ||||| |||||||||||||||||| | ||||||||||    
T  11033322 ggccggcttaagggtcaagcaatccaagcaagggttttaggcctcaaaattttatgtgaaaa-aaaggtctttaaaaaattaatttggttataagtatat 11033224  T
Q  322 tatatg 327  Q
    ||||||    
T  11033223 tatatg 11033218  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 8267350 - 8267421
Alignment:
Q  255 gctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    ||||||||||||||||||||   | |||| |||| | | ||||||||||||||||| ||||||||||||||||    
T  8267350 gctttagacctcaaaattttggatgaaaaaaaagtc-tctaaaaaattaatttgattataagtatattatatg 8267421  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 20511689 - 20511789
Alignment:
Q  222 ggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatat 321  Q
    ||||| ||||||| |||||||||| ||||||| |||||||  |||||||||||  | | ||| |||||| | |||||| |||||||| | |||| |||||    
T  20511689 ggccgccctaagggtcaaacaacccaaacaagggctttaggtctcaaaatttt--ggataaaaaaaggcatctaaaaatttaatttggttataaatatat 20511786  T
Q  322 tat 324  Q
    |||    
T  20511787 tat 20511789  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 224 - 327
Target Start/End: Original strand, 4941612 - 4941715
Alignment:
Q  224 ccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatatta 323  Q
    |||| ||||||  ||| ||||| ||||||| | ||||| ||||||||||||  || |||| |||||||| ||||||||||||||| |||||| |||||||    
T  4941612 ccggtctaagggccaagcaacccaaacaagggttttaggcctcaaaattttgggtgaaaaaaaaggcctctaaaaaattaatttggtcataattatatta 4941711  T
Q  324 tatg 327  Q
    ||||    
T  4941712 tatg 4941715  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 327
Target Start/End: Original strand, 23288554 - 23288640
Alignment:
Q  241 caacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    |||||||| |||||||||||| |||||||||| |  | || || |||||||| |||||||||||||| || |||| |||||||||||    
T  23288554 caacctaagcaagagctttaggcctcaaaattatgggcaagaaaaaaggcctctaaaaaattaatttaattataaatatattatatg 23288640  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 327
Target Start/End: Original strand, 40777910 - 40777995
Alignment:
Q  241 caacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    ||||| || |||||||||||| || |||||||||  || |||| |||||||| |||||| |||||||| | ||||||||||||||||    
T  40777910 caacccaagcaagagctttaggccacaaaattttaggtgaaaa-aaaggcctctaaaaatttaatttggttataagtatattatatg 40777995  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 326
Target Start/End: Original strand, 46149892 - 46149969
Alignment:
Q  250 caagagctttagacctcaaaatttttcgt-aaaaagaaaggcctttaaaaaattaatttgatcataagtatattatat 326  Q
    |||||||||||  ||||||| |||||  | ||||| |||||||| ||||||||||||||| | |||| ||||||||||    
T  46149892 caagagctttatgcctcaaattttttgatgaaaaaaaaaggcctctaaaaaattaatttggttataaatatattatat 46149969  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 3167362 - 3167402
Alignment:
Q  285 aaaggcctttaaaaaattaatttgatcataagtatattata 325  Q
    |||||||| ||||||||||||||| | ||||||||||||||    
T  3167362 aaaggcctctaaaaaattaatttggttataagtatattata 3167402  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 327
Target Start/End: Complemental strand, 22851433 - 22851328
Alignment:
Q  222 ggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatat 321  Q
    |||||||||||||   || ||||| || |||| ||||||||||||||||||||  || |||| ||| |||| ||||||||||||||| | ||||||||||    
T  22851433 ggccggcctaagggctaagcaacccaagcaagggctttagacctcaaaattttgggtgaaaaaaaacgcctctaaaaaattaatttggttataagtatat 22851334  T
Q  322 tatatg 327  Q
     |||||    
T  22851333 catatg 22851328  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Original strand, 27572450 - 27572555
Alignment:
Q  222 ggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatat 321  Q
    |||||||||||||  ||| ||||| || |||| ||||||| ||||||||||||   | |||| ||| |||| ||||||||||||||| | |||| |||||    
T  27572450 ggccggcctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaatgcctctaaaaaattaatttggttataattatat 27572549  T
Q  322 tatatg 327  Q
    ||||||    
T  27572550 tatatg 27572555  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 325
Target Start/End: Complemental strand, 9363453 - 9363352
Alignment:
Q  224 ccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatatta 323  Q
    ||||||||| | |||| ||||| ||||||| ||||||  | ||||||  ||| || |||| |||||||| || |||||||||||| | ||||||||||||    
T  9363453 ccggcctaacggtcaagcaacccaaacaagggctttatgcttcaaaaaatttggtgaaaaaaaaggcctctataaaattaatttggttataagtatatta 9363354  T
Q  324 ta 325  Q
    ||    
T  9363353 ta 9363352  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 35759315 - 35759243
Alignment:
Q  255 gctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    ||||||||||||||||||||  ||  ||| | ||| |||||||||||||||||  | ||||||||||||||||    
T  35759315 gctttagacctcaaaattttgggtggaaaaataggtctttaaaaaattaatttagttataagtatattatatg 35759243  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 2746886 - 2746809
Alignment:
Q  250 caagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    |||||| ||||| | | ||||||||  || |||||||||| || ||||||||||||||  | ||||||||||||||||    
T  2746886 caagagttttaggctttaaaattttgggtgaaaagaaaggtctctaaaaaattaattttgttataagtatattatatg 2746809  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 12722347 - 12722417
Alignment:
Q  256 ctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    |||||| ||||||||||||   | |||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  12722347 ctttaggcctcaaaattttggatgaaaa-aaaggtctttaaaaaattaatttgattataaatatattatatg 12722417  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 1214215 - 1214285
Alignment:
Q  257 tttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    ||||| ||||||||||||  || |||| |||||||| |||||||||||||   | ||||||||||||||||    
T  1214215 tttaggcctcaaaattttgagtgaaaaaaaaggcctctaaaaaattaattaatttataagtatattatatg 1214285  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 327
Target Start/End: Complemental strand, 28430234 - 28430128
Alignment:
Q  222 ggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgt-aaaaagaaaggcctttaaaaaattaatttgatcataagtata 320  Q
    ||||| |||||||  ||| ||||| || |||| ||||||| ||||||||||||   | ||||| ||| |||||||||||||||||||| | |||| ||||    
T  28430234 ggccgacctaagggccaagcaacccaagcaagggctttaggcctcaaaattttggatgaaaaaaaaaagcctttaaaaaattaatttggttataaatata 28430135  T
Q  321 ttatatg 327  Q
     ||||||    
T  28430134 atatatg 28430128  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 41732438 - 41732361
Alignment:
Q  250 caagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatattatatg 327  Q
    |||| ||||||| |||||||||| |  || |||| |||||||| |||||| ||||| || | ||||||||||||||||    
T  41732438 caagggctttaggcctcaaaattatgggtgaaaaaaaaggcctctaaaaatttaatatggttataagtatattatatg 41732361  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 24209425 - 24209321
Alignment:
Q  222 ggccggcctaaggatcaaacaacctaaacaagagctttagacctcaaaatttttcgtaaaaagaaaggcctttaaaaaattaatttgatcataagtatat 321  Q
    ||||||| |||||  ||| ||||| || |||| ||| ||| ||||||||||||     |||| |||| ||| ||||||||||||||| | ||||||||||    
T  24209425 ggccggcttaagggccaagcaacccaagcaagggctataggcctcaaaattttggacgaaaaaaaagacctctaaaaaattaatttggttataagtatat 24209326  T
Q  322 tatat 326  Q
    |||||    
T  24209325 tatat 24209321  T

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