View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5610-Insertion-1 (Length: 72)
Name: NF5610-Insertion-1
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5610-Insertion-1 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 64; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 6947365 - 6947428
Alignment:
| Q |
9 |
aatggatactattgaactactaattatagcatcagcttagaaacttataccattgtaccataca |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6947365 |
aatggatactattgaactactaattatagcatcagcttagaaacttataccattgtaccataca |
6947428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 6934710 - 6934768
Alignment:
| Q |
14 |
atactattgaactactaattatagcatcagcttagaaacttataccattgtaccataca |
72 |
Q |
| |
|
|||||| ||||||| ||||| | |||| |||||||||| |||||||||||||||||||| |
|
|
| T |
6934710 |
atactactgaactattaattttggcatgagcttagaaatttataccattgtaccataca |
6934768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 1985473 - 1985531
Alignment:
| Q |
9 |
aatggatactattgaactactaattatagcatcagcttagaaacttataccattgtacc |
67 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1985473 |
aatggatgctattgaactattagttatagcaacagcttagaaacttataccattgtacc |
1985531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University