View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5610-Insertion-3 (Length: 1106)
Name: NF5610-Insertion-3
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5610-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 928; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 928; E-Value: 0
Query Start/End: Original strand, 7 - 1014
Target Start/End: Complemental strand, 45518946 - 45517937
Alignment:
| Q |
7 |
ataatgtttaaggtagttagttacaagttagttatgattagttagcttagtaatgatttcattctatcaatttcaaataatcaatctttctctcaattta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45518946 |
ataatgtttaaggtagttagttacaagttagttatgattagttagcttagtaatgatttcattctatcaatttcaaataatcaatctttctctcaattta |
45518847 |
T |
|
| Q |
107 |
tttttctctttgttgggctataccatgcttctcaacatggtatcagaatcttgtatcatagaaagcttcttagattttggttgaacttgatcactaatga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45518846 |
tttttctctttgttgggctataccatgcttctcaacatggtatcagaatcttgtatcatagaaagcttcttagattttggttgaacttgatcactaatga |
45518747 |
T |
|
| Q |
207 |
tttatttagttatacctggtttctcgaaaaagtattcatgatcatggaaagccaccatactcatgttcnnnnnnnacaagtatatgatgacttatatatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45518746 |
tttatttagttatacctggtttctcgaaaaagtattcatgatcatggaaagccaccatactcatgttctttttttacaagtatatgatgacttatatatt |
45518647 |
T |
|
| Q |
307 |
gaatatgaatttagctagccaatgctgcatttcaggccctacaatccccaatttttgctggacaagaagcaaatccaaagactgtcgcgtcgatcatttt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45518646 |
gaatatgaatttagctagccaatgctgcatttcaggccctacaatccccaatttttgctggacaagaagcaaacccaaagactgtcgcgtcgatcatttt |
45518547 |
T |
|
| Q |
407 |
aggtggtggagctggaactcgtctattccctcttactcaaaaaagggctaaaccggctgtaaatatttgaatttactaatctctgtcttgttatgttctt |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
45518546 |
aggtggtggagctggaactcgtctattccctcttactcaaaaaagggctaaaccggctgtacatatttgaatttactaatctctgtcttgttatgttctt |
45518447 |
T |
|
| Q |
507 |
ccagaactaggcttgaattcactaatctgtgcatatctttttatgttcttcatctgatgtttaggtgccattcggaggatgttataggctggtggacata |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45518446 |
ccagaactaggcttgaattcactaatctgtgcatatctttttatgttcttcatctgatgtttaggtgccattcggaggatgttataggctggtggacata |
45518347 |
T |
|
| Q |
607 |
ccaatgagcaattgtattaatagtgaaattaataaaatttatgtccttacacaattcaattctcagtccctcaaccgtcacattgctcgaacatataatt |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45518346 |
ccaatgagcaattgtattaatagtgaaattaataaaatttatgtccttacacaattcaattctcagtccctcaaccgtcacattgctcgaacatataatt |
45518247 |
T |
|
| Q |
707 |
tgggaggtggcgtcaactgtggggggagttttattgaggtacacctatttttgttactgtgaattannnnnnnactcacttttggtgtatacagactaaa |
806 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
45518246 |
tgggaggtggcgtcaactgtggtgggagttttattgaggtacacctttttttgttaccgtgaattatttttttactcacttttggtgtatacagactaaa |
45518147 |
T |
|
| Q |
807 |
acttttttatggtaggtattggtagcaactcaaacactcggcgaatcaggaaataagtggtttcagggtactgccgatgctgtaagacgattcctttggt |
906 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45518146 |
acttttttatggtaggtattggcagcaactcaaacactcggcgaatcaggaaataagtggtttcagggtactgccgatgctgtaagacgattcctttggt |
45518047 |
T |
|
| Q |
907 |
tgtttgaggtatgccataattagtttaatagttttcatatttcatactattgcagatttttcaggatatatttttaagg-tgatcagaaaat-agactgt |
1004 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
| T |
45518046 |
tgtttgaggtatgccataattagtttaatagttttcatatttcatactattgcagatttttcaggatatatttttaaggttgatcagaaaataagactgt |
45517947 |
T |
|
| Q |
1005 |
cacagatgca |
1014 |
Q |
| |
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|||||||||| |
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|
| T |
45517946 |
cacagatgca |
45517937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 10428775 - 10428832
Alignment:
| Q |
63 |
tttcattctatcaatttcaaataatcaatctttctctcaatttatttttctctttgtt |
120 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
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|
| T |
10428775 |
tttcattttatcaatttcaaataataaatccttctctcaattaatttttctctttgtt |
10428832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 10431090 - 10431135
Alignment:
| Q |
77 |
tttcaaataatcaatctttctctcaatttatttttctctttgttgg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
10431090 |
tttcaaataatcaatctttctctcaatttatttttctttttgttgg |
10431135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 11708362 - 11708318
Alignment:
| Q |
65 |
tcattctatcaatttcaaataatcaatctttctctcaatttattt |
109 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11708362 |
tcattctatcaattccaaataatcaatctttctctcaatttattt |
11708318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 34558056 - 34558102
Alignment:
| Q |
65 |
tcattctatcaatttcaaataatcaatctttctctcaatttattttt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
34558056 |
tcattctatcaatttcaaataatcaatatttatctcaatttcttttt |
34558102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 11677681 - 11677617
Alignment:
| Q |
67 |
attctatcaa-tttcaaataatcaatctttctctcaatttatttttctctttgttgggctatacc |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| ||| |||| |
|
|
| T |
11677681 |
attctatcaaatttcaaataatcaatctttctgccaatttacttttttctttgttgagctttacc |
11677617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 11685960 - 11685896
Alignment:
| Q |
67 |
attctatcaa-tttcaaataatcaatctttctctcaatttatttttctctttgttgggctatacc |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||| ||| |||| |
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|
| T |
11685960 |
attctatcaaatttcaaataatcaatctttctgccaatttacttttttctttgttgagctttacc |
11685896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 46290067 - 46290012
Alignment:
| Q |
65 |
tcattctatcaatttcaaataatcaatctttctctcaatttatttttctctttgtt |
120 |
Q |
| |
|
|||||| || |||| |||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
46290067 |
tcattccattaattccaaataatcaatctttatctcaaattatttttctctttgtt |
46290012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 35212546 - 35212622
Alignment:
| Q |
65 |
tcattctatcaatttcaaataatcaatctttctctcaatttatttttctctt-tgttgggctataccatgcttctca |
140 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||| ||||||| ||||| ||||| || |||||| ||||||| |
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|
| T |
35212546 |
tcattctatcaattccaagtaatcaatatttctctcaaattattttcctcttaggttggactctaccattcttctca |
35212622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 583 - 692
Target Start/End: Complemental strand, 54646318 - 54646209
Alignment:
| Q |
583 |
ggatgttataggctggtggacataccaatgagcaattgtattaatagtgaaattaataaaatttatgtccttacacaattcaattctcagtccctcaacc |
682 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||||| ||||| ||||||| || |||||||| | ||| || || || ||||||||| |||||||||| |
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|
| T |
54646318 |
ggatgctataggcttatagacattccaatgagcaactgtataaatagtggcatcaataaaatatttgtgctaactcagttcaattctgcttccctcaacc |
54646219 |
T |
|
| Q |
683 |
gtcacattgc |
692 |
Q |
| |
|
| |||||||| |
|
|
| T |
54646218 |
gacacattgc |
54646209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 29611926 - 29611848
Alignment:
| Q |
69 |
tctatcaatttcaaataatcaatctttctctcaatttatttttctctttgttgggctataccatgcttctcaacatggtat |
149 |
Q |
| |
|
||||| |||| || ||||| |||||||||||||||||||| ||||| |||||||| |||||| ||||||||||||||| |
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|
| T |
29611926 |
tctattaattccatataattcatctttctctcaatttattt--ctcttagttgggctcaaccatgtttctcaacatggtat |
29611848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 3738727 - 3738772
Alignment:
| Q |
93 |
tttctctcaatttatttttctctttgttgggctataccatgcttct |
138 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||||| |
|
|
| T |
3738727 |
tttctctcaatttattattctctttgttgagctctaccatgcttct |
3738772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 40499 - 40555
Alignment:
| Q |
65 |
tcattctatcaatttcaaataatcaatctttctctcaatttatttttctctttgttgggct |
125 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40499 |
tcattctatctattccaaataatcaatctt--tctcaatttatttt--tctttgttgggct |
40555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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