View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5610-Insertion-5 (Length: 810)

Name: NF5610-Insertion-5
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5610-Insertion-5
NF5610-Insertion-5
[»] chr5 (24 HSPs)
chr5 (16-808)||(2581826-2582621)
chr5 (161-276)||(35650274-35650389)
chr5 (161-274)||(43222082-43222195)
chr5 (159-277)||(31156501-31156618)
chr5 (156-270)||(7840379-7840493)
chr5 (165-272)||(18625429-18625546)
chr5 (173-266)||(38283747-38283838)
chr5 (159-272)||(2984398-2984511)
chr5 (204-272)||(4895743-4895811)
chr5 (204-272)||(14349802-14349870)
chr5 (204-272)||(35660617-35660685)
chr5 (164-272)||(36290561-36290669)
chr5 (146-272)||(43309051-43309175)
chr5 (208-274)||(9465746-9465812)
chr5 (159-272)||(13032063-13032185)
chr5 (165-215)||(30355218-30355268)
chr5 (204-272)||(32129625-32129693)
chr5 (204-272)||(37266730-37266798)
chr5 (173-268)||(23253764-23253859)
chr5 (159-233)||(26452512-26452586)
chr5 (160-198)||(29340942-29340980)
chr5 (204-266)||(40753176-40753238)
chr5 (294-323)||(3440926-3440955)
chr5 (294-323)||(35650404-35650433)
[»] chr2 (12 HSPs)
chr2 (159-275)||(41072954-41073070)
chr2 (159-266)||(373178-373285)
chr2 (159-217)||(30824122-30824180)
chr2 (159-272)||(374947-375060)
chr2 (159-272)||(8988810-8988922)
chr2 (159-272)||(23459854-23459967)
chr2 (204-272)||(28564891-28564959)
chr2 (204-272)||(13238680-13238748)
chr2 (212-264)||(35315509-35315561)
chr2 (204-272)||(35316824-35316892)
chr2 (204-243)||(10877702-10877741)
chr2 (159-247)||(28716572-28716656)
[»] chr7 (21 HSPs)
chr7 (174-274)||(27386944-27387044)
chr7 (159-273)||(30588489-30588603)
chr7 (159-240)||(30760293-30760374)
chr7 (169-247)||(26826072-26826150)
chr7 (159-277)||(32915903-32916028)
chr7 (174-272)||(47799908-47800006)
chr7 (157-274)||(20400004-20400121)
chr7 (174-274)||(23264068-23264168)
chr7 (190-273)||(676029-676112)
chr7 (209-266)||(48831206-48831263)
chr7 (204-272)||(25084736-25084804)
chr7 (160-247)||(8149565-8149651)
chr7 (157-323)||(18118456-18118623)
chr7 (159-274)||(19889040-19889155)
chr7 (204-272)||(12139325-12139394)
chr7 (174-274)||(1193703-1193803)
chr7 (204-272)||(7362567-7362635)
chr7 (204-272)||(9559062-9559130)
chr7 (160-194)||(5463999-5464033)
chr7 (204-266)||(18198255-18198317)
chr7 (161-198)||(23311454-23311491)
[»] chr4 (17 HSPs)
chr4 (159-274)||(38865233-38865346)
chr4 (174-272)||(56453828-56453926)
chr4 (204-272)||(39862516-39862584)
chr4 (204-272)||(56558278-56558346)
chr4 (159-274)||(37002257-37002372)
chr4 (162-272)||(5524404-5524514)
chr4 (204-272)||(19901926-19901994)
chr4 (159-272)||(56269084-56269198)
chr4 (160-272)||(1015862-1015975)
chr4 (174-236)||(54588829-54588891)
chr4 (204-277)||(34778420-34778493)
chr4 (162-227)||(52030747-52030812)
chr4 (204-272)||(5763170-5763238)
chr4 (204-272)||(33262560-33262628)
chr4 (208-272)||(36688196-36688260)
chr4 (208-272)||(42010120-42010184)
chr4 (204-277)||(30567900-30567973)
[»] chr3 (14 HSPs)
chr3 (162-266)||(28229416-28229515)
chr3 (159-254)||(32577476-32577570)
chr3 (159-272)||(49679278-49679391)
chr3 (162-265)||(33338186-33338288)
chr3 (192-266)||(48950597-48950671)
chr3 (159-272)||(31523676-31523789)
chr3 (204-266)||(19830445-19830507)
chr3 (174-276)||(33979903-33980005)
chr3 (159-277)||(42613034-42613152)
chr3 (204-272)||(2229982-2230050)
chr3 (204-272)||(34373593-34373661)
chr3 (204-272)||(34373830-34373898)
chr3 (209-277)||(54911658-54911726)
chr3 (294-323)||(28229362-28229391)
[»] chr1 (15 HSPs)
chr1 (160-271)||(24413291-24413402)
chr1 (194-260)||(49943989-49944054)
chr1 (731-808)||(26006439-26006516)
chr1 (182-266)||(1358406-1358489)
chr1 (159-270)||(36700831-36700942)
chr1 (159-270)||(36716935-36717046)
chr1 (204-272)||(50294071-50294139)
chr1 (204-266)||(12380924-12380986)
chr1 (204-266)||(12384991-12385053)
chr1 (160-198)||(32887872-32887910)
chr1 (159-272)||(30077652-30077765)
chr1 (204-272)||(12151766-12151834)
chr1 (208-272)||(33441536-33441600)
chr1 (173-272)||(52280047-52280146)
chr1 (158-200)||(42720847-42720889)
[»] chr8 (13 HSPs)
chr8 (164-272)||(26749556-26749664)
chr8 (173-263)||(24557400-24557490)
chr8 (162-274)||(21492730-21492844)
chr8 (204-272)||(10672520-10672588)
chr8 (204-272)||(28069718-28069786)
chr8 (204-272)||(30426677-30426745)
chr8 (208-274)||(15901454-15901520)
chr8 (162-272)||(34612520-34612631)
chr8 (204-272)||(36991355-36991423)
chr8 (159-272)||(1937162-1937276)
chr8 (208-274)||(16313957-16314023)
chr8 (160-198)||(33709154-33709192)
chr8 (209-258)||(24557203-24557252)
[»] chr6 (12 HSPs)
chr6 (156-252)||(27095956-27096051)
chr6 (164-272)||(24484838-24484946)
chr6 (160-272)||(2142301-2142413)
chr6 (204-272)||(4804447-4804515)
chr6 (204-272)||(17944161-17944229)
chr6 (204-272)||(27826537-27826605)
chr6 (208-271)||(32254040-32254103)
chr6 (204-266)||(21159383-21159445)
chr6 (204-272)||(1249154-1249222)
chr6 (160-198)||(28696732-28696770)
chr6 (204-262)||(29698162-29698220)
chr6 (193-238)||(2614472-2614517)
[»] scaffold0171 (1 HSPs)
scaffold0171 (159-272)||(17314-17427)
[»] scaffold0009 (1 HSPs)
scaffold0009 (204-274)||(6441-6511)
[»] scaffold0250 (1 HSPs)
scaffold0250 (204-272)||(7146-7214)


Alignment Details
Target: chr5 (Bit Score: 605; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 16 - 808
Target Start/End: Complemental strand, 2582621 - 2581826
Alignment:
Q  16 gttcaattattcctctaaaatttgtgaaacctcaaaaactcttgattttgttaaacatttgtcaaatttgtcctccgtctattttcgtcgtttgatctta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2582621 gttcaattattcctctaaaatttgtgaaacctcaaaaactcttaattttgttaaacatttgtcaaagttgtcctccgtctattttcgtcgtttgatctta 2582522  T
Q  116 tgacgtggtcattaactacacacatgacgagttaagatctctattctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  2582521 tgacgtggtcattaactacacacatgacgagttaagatctctattctccatttctttcatttggggagatatagacacaaaaaatcttaaaaataattaa 2582422  T
Q  216 tgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttttcaccgtctccatttatta------atttattttaataaat 309  Q
    ||||| |  || | |||||||||||||||||| ||||||||||| |||||| |||||||||||  ||||||||||||       ||||||||||||||||    
T  2582421 tgatgatgagatttatttaatgataggacccaccacctattttt-gtgtctatctcttttcacaatctccatttattttaatccatttattttaataaat 2582323  T
Q  310 ggagaggatctcaaaacccacacatgacaaccc-acac-acgaacaaaatgttataccttgtcactccgagtgtttaactaatattttcaatagaaaact 407  Q
    ||||||||||||||  ||||||||||||||||| |||| |||| ||||||||| ||||| ||||| | |||||||| |||||||||||||||||||||||    
T  2582322 ggagaggatctcaa--cccacacatgacaaccccacacgacgatcaaaatgttttacctcgtcacacggagtgtttgactaatattttcaatagaaaact 2582225  T
Q  408 gttttcttttatttttcctaaaatttgtgtgattattgaattcggcaaacgccctctcaaatctggtggtttacaacagtgtaaatggatccttaggtgt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2582224 gttttcttttatttttcctaaaatttgtgtgattattgaattcggcaaacgccctctcaaatctggtggtttacaacagtgtaaatggatccttaggtgt 2582125  T
Q  508 tcataaaaaagtggaagttgtaacaaaaatggatccctaataatgaacaggtctggttctaagatgtttacgtgcatattaacacaaagcacatcatctc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2582124 tcataaaaaagtggaagttgtaacaaaaatggatccctaataatgaacaggtctggttctaagatgtttacgtgcatattaacacaaagcacatcatctc 2582025  T
Q  608 acatttgtgtaatgtgacaaattcaaagtatagttcatg-nnnnnnnntggaagttgtaacaaaaatgacgacgttataaaaatgttaaacgagattatg 706  Q
    |||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  2582024 acatttgtgtaatgtgacaaattcaaagtatagttcatgaaaaaaaaatggaagttgtaacaaaaatgacgacgttataaaaatgttaaac--gattatg 2581927  T
Q  707 tatgcaagtgtgagtgagagcatttagtaacttgattcagtcataattgtcgaagttttctgactaaaataatcaataaacctttcacttgttgagacca 806  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2581926 t-cgcaagtgtgagtgagagcatttagtaacttgattcagtcataattgtcgaagttttctgactaaaataatcaataaacctttcacttgttgagacca 2581828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 161 - 276
Target Start/End: Original strand, 35650274 - 35650389
Alignment:
Q  161 ctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttttt 260  Q
    |||||||||||||||||| ||||||||| ||| |||||   ||||| |||||||||||||||   | ||||||||| |||||||||| ||||||||||||    
T  35650274 ctccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacctatttttt 35650373  T
Q  261 gtgtctctctcttttc 276  Q
    |||||| ||| |||||    
T  35650374 gtgtctatcttttttc 35650389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 43222082 - 43222195
Alignment:
Q  161 ctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttttt 260  Q
    |||||||| |||||||  |||||||| ||||||| ||| | || || ||||||||||||||| |||  |||||||||||| |||||| || |||||||||    
T  43222082 ctccatttatttcattcagagagataaagacacataaaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctatttttt 43222181  T
Q  261 gtgtctctctcttt 274  Q
    |||||| |||||||    
T  43222182 gtgtctatctcttt 43222195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 31156501 - 31156618
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| ||||||||| ||||||||||||||| | |   |||||  ||||||||||| ||  |||||| ||||||||| || ||| ||| ||||||    
T  31156501 ttctccatttgtttcatttgaagagatatagacacatacacggttaaaattaattaatgatagtgagactcacttaatgata-gatccaccacttatttt 31156599  T
Q  259 ttgtgtctctctcttttca 277  Q
    |||||||| ||||||||||    
T  31156600 ttgtgtctatctcttttca 31156618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 270
Target Start/End: Original strand, 7840379 - 7840493
Alignment:
Q  156 ctattctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctat 255  Q
    ||||||||||||||||  | | ||| ||||| ||||| ||||| ||||||||||||||||||||| | | ||  |||||||  || ||| ||||| ||||    
T  7840379 ctattctccatttcttcaaataggatagataaagacataaaaactcttaaatataattaatgatgatggaacatatttaattctaagactcatcatctat 7840478  T
Q  256 tttttgtgtctctct 270  Q
    ||||| |||||||||    
T  7840479 tttttatgtctctct 7840493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 18625546 - 18625429
Alignment:
Q  165 atttctttcatttggagagatatagacacaaaaagtctt----------aaatataattaatgatggtaggactcatttaatgataggacccatcaccta 254  Q
    |||||||||||||||||||||| ||||||| ||| ||||          ||||||||||||||||||| |||| || ||| || ||||||||| || |||    
T  18625546 atttctttcatttggagagataaagacacataaaatcttgaaaaaaataaaatataattaatgatggtgggacccacttagtggtaggacccaccatcta 18625447  T
Q  255 ttttttgtgtctctctct 272  Q
    |||||||||||| |||||    
T  18625446 ttttttgtgtctttctct 18625429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 38283747 - 38283838
Alignment:
Q  173 catttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||| ||||||||||||||||||   ||||||| |||||||||||| ||  |||| ||||||||||| |||||| |||||| ||| |||||||    
T  38283747 catttagagagatatagacacaaat--tcttaaaaataattaatgatagtcagacttatttaatgatatgacccaccacctactttatgtgtct 38283838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 2984511 - 2984398
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    ||||| |||| ||||||||  ||||||| ||||||| |||   | ||| ||||||||||||||| |||| |||||| ||||||||  |||||| ||||||    
T  2984511 ttctcaatttgtttcatttaaagagataaagacacataaaaaataaaaaataattaatgatggtgggacccatttagtgataggattcatcacttatttt 2984412  T
Q  259 ttgtgtctctctct 272  Q
     ||||||| |||||    
T  2984411 atgtgtctatctct 2984398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 4895811 - 4895743
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  4895811 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 4895743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 14349802 - 14349870
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  14349802 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctgtctct 14349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 35660685 - 35660617
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  35660685 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 35660617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 36290561 - 36290669
Alignment:
Q  164 catttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtg 263  Q
    ||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||  || ||| |||||||||||| ||| |||||||||||    
T  36290561 catttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttgtg 36290660  T
Q  264 tctctctct 272  Q
    ||| |||||    
T  36290661 tctatctct 36290669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 43309051 - 43309175
Alignment:
Q  146 gttaagatctctattctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacc 245  Q
    ||||||||||||  ||||||||||||  ||||| ||||||| ||||||| ||| |||| || | ||||||||||||| | || ||||||||| || || |    
T  43309051 gttaagatctct--tctccatttcttcaatttgaagagataaagacacataaaatcttgaaaaaaattaatgatggtggaacccatttaatggtaagatc 43309148  T
Q  246 catcacctattttttgtgtctctctct 272  Q
    ||  | ||||||||| ||||| |||||    
T  43309149 cactatctattttttatgtctatctct 43309175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 9465746 - 9465812
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttt 274  Q
    |||||||||||||||   | |||||||||||||||| ||| |||||||||| ||||||| |||||||    
T  9465746 ataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctcttt 9465812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 13032063 - 13032185
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaa---------tataattaatgatggtaggactcatttaatgataggacccatc 249  Q
    |||||||||||||  ||||||||||||| ||||||| ||| |||||||         |||||||||||||||| |||| |||||| || |||||| || |    
T  13032063 ttctccatttcttcaatttggagagataaagacacataaaatcttaaaaaaataaaatataattaatgatggtgggacccatttagtggtaggactcacc 13032162  T
Q  250 acctattttttgtgtctctctct 272  Q
    | |||||| |||||||| |||||    
T  13032163 atctatttcttgtgtctatctct 13032185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 30355218 - 30355268
Alignment:
Q  165 atttctttcatttggagagatatagacacaaaaagtcttaaatataattaa 215  Q
    |||||||| ||||||||||||| ||||||||||| ||||| ||||||||||    
T  30355218 atttctttaatttggagagataaagacacaaaaaatcttacatataattaa 30355268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 32129693 - 32129625
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || |||||||| |||||| |||||    
T  32129693 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctatttttggtgtctatctct 32129625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 37266730 - 37266798
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || || |||||| || ||||||||||||||| |||||    
T  37266730 aaatataattaatgatggtgggacccacttagtggtatgacccaccatctattttttgtgtctatctct 37266798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 23253859 - 23253764
Alignment:
Q  173 catttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctct 268  Q
    |||||||| ||||||||||||||||  |||| || |||||||||||| ||   ||  ||||||||| | |||||| |||| ||||| |||||||||    
T  23253859 catttggatagatatagacacaaaagttcttgaaaataattaatgatagtgaaacctatttaatgacatgacccaccacccattttatgtgtctct 23253764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 26452512 - 26452586
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcattt 233  Q
    |||||| ||| |||||||| |||||||||| |||||| |   |||||| ||||||||||||||| ||| ||||||    
T  26452512 ttctccctttttttcattttgagagatataaacacaatataacttaaaaataattaatgatggtgggattcattt 26452586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 29340942 - 29340980
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaa 198  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  29340942 tctccatttcattcatttggagagatatagagacaaaaa 29340980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 40753238 - 40753176
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| ||  ||||||||||||||    
T  40753238 aaatataattaatgatggtgggacccacttagtggtaggacccaccatatattttttgtgtct 40753176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 3440926 - 3440955
Alignment:
Q  294 atttattttaataaatggagaggatctcaa 323  Q
    ||||||||||||||||||||||||||||||    
T  3440926 atttattttaataaatggagaggatctcaa 3440955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 323
Target Start/End: Original strand, 35650404 - 35650433
Alignment:
Q  294 atttattttaataaatggagaggatctcaa 323  Q
    ||||||||||||||||||||||||||||||    
T  35650404 atttattttaataaatggagaggatctcaa 35650433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 41073070 - 41072954
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||| ||  ||  ||||||||||||||||||| || |||||||    
T  41073070 ttctccatttctttcatttagagagataaagacacaaaaaatcttaaaaataattaatgattgtgagatccatttaatgataggacccaccaactatttt 41072971  T
Q  259 ttgtgtctctctctttt 275  Q
     | ||||| | ||||||    
T  41072970 atatgtctatatctttt 41072954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 159 - 266
Target Start/End: Complemental strand, 373285 - 373178
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    ||||||||||||| ||||| || ||||| ||| ||||||| ||||||| ||||||||| ||||| ||| ||||||||| ||| |||||| ||||||||||    
T  373285 ttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctatttt 373186  T
Q  259 ttgtgtct 266  Q
    ||||||||    
T  373185 ttgtgtct 373178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 30824122 - 30824180
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatg 217  Q
    ||||||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||    
T  30824122 ttctccatttcttccatttagagagatatagacacaaaaaatcttaaaaataattaatg 30824180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 374947 - 375060
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| | |||||||||| ||| ||||||    
T  374947 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggacccaccacttatttt 375046  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  375047 ttgtgtctatctct 375060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 8988810 - 8988922
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||| ||||| ||||||    
T  8988810 ttctccatttgttccatttagagagataaagacacataaaaa-taaaaaataattaatgatggtgggacccacttagtgataggacctatcacttatttt 8988908  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  8988909 ttgtgtctatctct 8988922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 23459967 - 23459854
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||  |||||||| ||||||| |||   | ||| ||||||||||||||| |||| |||||| |||||||||||  ||| ||||||    
T  23459967 ttctccatttgttccattcagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttatttt 23459868  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  23459867 ttgtgtctatctct 23459854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 28564891 - 28564959
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  28564891 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 28564959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 13238680 - 13238748
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||  || ||||||||| || ||||||||||||||| |||||    
T  13238680 aaatataattaatgatggtgggacccacttggtggtaggacccaccatctattttttgtgtctatctct 13238748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 35315509 - 35315561
Alignment:
Q  212 ttaatgatggtaggactcatttaatgataggacccatcacctattttttgtgt 264  Q
    |||| ||||| |||||||| |||||||||||||||| |||||||| |||||||    
T  35315509 ttaacgatggaaggactcacttaatgataggacccaccacctattgtttgtgt 35315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 35316824 - 35316892
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||| ||| || ||||||||||||||| |||||    
T  35316824 aaatataattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctct 35316892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 10877702 - 10877741
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgatagga 243  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  10877702 aaatataattaatgatggtgggattcatttaatgatagga 10877741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 28716656 - 28716572
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggaccca 247  Q
    |||||||||||||||||||  ||||| | ||||||||    | ||||| |||||||||||| ||||||  ||||||||||||| |||||    
T  28716656 ttctccatttctttcatttaaagagagaaagacacaa----ttttaaaaataattaatgatagtaggatccatttaatgatagaaccca 28716572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 27387044 - 27386944
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctctt 273  Q
    ||||||| ||||||||||||||||| |||| || |||||||||  |||||| ||||||||||||||||||| || | | |||||||||||||| ||||||    
T  27387044 atttggaaagatatagacacaaaaaatcttgaaaataattaatagtggtagaactcatttaatgataggacacaccgcttattttttgtgtctatctctt 27386945  T
Q  274 t 274  Q
    |    
T  27386944 t 27386944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 30588489 - 30588603
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| ||||||||||| |||| ||||||    
T  30588489 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccgtcacttatttt 30588588  T
Q  259 ttgtgtctctctctt 273  Q
    |||||||| ||||||    
T  30588589 ttgtgtctatctctt 30588603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 30760374 - 30760293
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgata 240  Q
    |||||||||||||||||||| ||||||| ||||| ||||| ||||||| |||||||||||||||   ||||||| |||||||    
T  30760374 ttctccatttctttcatttgtagagataaagacataaaaaatcttaaaaataattaatgatggtgcaactcattcaatgata 30760293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 26826150 - 26826072
Alignment:
Q  169 ctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggaccca 247  Q
    |||||||||||||||||| ||| ||||||  | ||||| |||||||||||||||   ||||||||||||||||||||||    
T  26826150 ctttcatttggagagataaagatacaaaagttattaaaaataattaatgatggttaaactcatttaatgataggaccca 26826072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 32915903 - 32916028
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaa-gtcttaaa------tataattaatgatggtaggactcatttaatgataggacccatcac 251  Q
    ||||||||||||| |||||||||||||| ||||||||||| || |||||      ||||||| |||||||| ||||||| |||||| |||||||||  |     
T  32915903 ttctccatttcttccatttggagagataaagacacaaaaaagttttaaaaaaaaatataattcatgatggtgggactcacttaatggtaggacccactat 32916002  T
Q  252 ctattttttgtgtctctctcttttca 277  Q
     |||||||||||||| ||||| ||||    
T  32916003 ttattttttgtgtctatctctcttca 32916028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 47800006 - 47799908
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    |||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||||||||| |||||||||||||| |||||    
T  47800006 atttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtgtctatctct 47799908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 20400004 - 20400121
Alignment:
Q  157 tattctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatt 256  Q
    |||| ||||||||||  ||||  | ||||| ||||| ||||| ||||||| |||||||||||| ||  |||||||||||||||| |||||| |||  |||    
T  20400004 tattttccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacccaccactaatt 20400103  T
Q  257 ttttgtgtctctctcttt 274  Q
    | |||||||| |||||||    
T  20400104 tgttgtgtctatctcttt 20400121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 23264168 - 23264068
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctctt 273  Q
    ||||| ||| ||| ||| ||||||| ||||||| ||||||| |||||   ||||||||||||||||| ||| ||||||| ||||||||||| | ||||||    
T  23264168 atttgaagaaataaagatacaaaaaatcttaaaaataattattgatgaggggactcatttaatgatatgacacatcaccaattttttgtgtttatctctt 23264069  T
Q  274 t 274  Q
    |    
T  23264068 t 23264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 273
Target Start/End: Complemental strand, 676112 - 676029
Alignment:
Q  190 acacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctctt 273  Q
    ||||||||| |||| || |||||||||||||||  |||||||||||||||||||  || ||| |||||||||||| | ||||||    
T  676112 acacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctctt 676029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 48831263 - 48831206
Alignment:
Q  209 taattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    |||||||| ||||||| | ||||||||||||||||| || ||||||||||||||||||    
T  48831263 taattaataatggtagaattcatttaatgataggacacaccacctattttttgtgtct 48831206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 25084804 - 25084736
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  25084804 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 25084736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 8149565 - 8149651
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggaccca 247  Q
    |||| ||||||  |||||||||||||| ||||||||||||  | ||| ||||||||||||||| |||| || ||||||||| ||||||    
T  8149565 tctctatttctaccatttggagagataaagacacaaaaag-gtaaaaaataattaatgatggtgggacccacttaatgatatgaccca 8149651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 323
Target Start/End: Complemental strand, 18118623 - 18118456
Alignment:
Q  157 tattctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatt 256  Q
    |||||||||||||||  ||||  | ||||| ||| | ||||| |||| || |||||||||||||||  ||||||||||||||||||| ||| |||  |||    
T  18118623 tattctccatttcttctatttaaatagataaagatataaaaaatcttgaaaataattaatgatggtgtgactcatttaatgataggatccaccactaatt 18118524  T
Q  257 ttttgtgtctctctcttt-tcaccgtctccatttattaatttattttaataaatggagaggatctcaa 323  Q
    | ||| | || |||||||   |  | |   ||||||| ||||||||| ||||||||||||||||||||    
T  18118523 tgttgggactatctctttcataatgacaatatttatttatttatttttataaatggagaggatctcaa 18118456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 19889155 - 19889040
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| | || || ||| ||||||||||||  || ||||||    
T  19889155 ttctccatttattccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtggaacccacttagtgataggacccacaacttatttt 19889056  T
Q  259 ttgtgtctctctcttt 274  Q
    |||| ||| |||||||    
T  19889055 ttgtatctatctcttt 19889040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 12139325 - 12139394
Alignment:
Q  204 aaatataattaatgatggtaggactc-atttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| | | |||||| ||||||||| || ||||||||||||||| |||||    
T  12139325 aaatataattaatgatggtgggaccccacttaatggtaggacccaccatctattttttgtgtctatctct 12139394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 1193803 - 1193703
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctctt 273  Q
    |||| |||||||| |||||||| ||   || || |||||||||  ||||  |||||||||||||| | || ||| |||||||||||||||||| ||||||    
T  1193803 atttagagagataaagacacaataaaaatttaaaataattaatcgtggttagactcatttaatgacatgagccaccacctattttttgtgtctatctctt 1193704  T
Q  274 t 274  Q
    |    
T  1193703 t 1193703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 7362567 - 7362635
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| | || |||||| || || |||||| || ||||||||||||||| |||||    
T  7362567 aaatataattaatgatggtggaacccatttagtggtacgacccaccatctattttttgtgtctatctct 7362635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 9559130 - 9559062
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||| ||| |||||    
T  9559130 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtatctatctct 9559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 5464033 - 5463999
Alignment:
Q  160 tctccatttctttcatttggagagatatagacaca 194  Q
    |||||||||| ||||||||||||||||||||||||    
T  5464033 tctccatttcattcatttggagagatatagacaca 5463999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 18198255 - 18198317
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||||||||||||||| ||||||| ||| ||  || ||||| || |||||||||||||||    
T  18198255 aaatataattaatgatggtgggactcacttagtggcagaacccaccatctattttttgtgtct 18198317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 23311454 - 23311491
Alignment:
Q  161 ctccatttctttcatttggagagatatagacacaaaaa 198  Q
    |||||||||||||||||||||||||| | |||||||||    
T  23311454 ctccatttctttcatttggagagataaaaacacaaaaa 23311491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 159 - 274
Target Start/End: Original strand, 38865233 - 38865346
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| ||||||||||||||||||||||||||||  |||| || ||||||||||||| | | ||  |||||||| ||||||| | ||| ||||||    
T  38865233 ttctccatttatttcatttggagagatatagacacaaaa--tcttgaaaataattaatgatgctggaacctatttaatggtaggacctaccacatatttt 38865330  T
Q  259 ttgtgtctctctcttt 274  Q
    |||||||| |||||||    
T  38865331 ttgtgtctatctcttt 38865346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 56453926 - 56453828
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    |||| |||||||| ||||||| |||   | ||| ||||| ||||||||| |||| || |||||||||||||||| |||||||||||||||||| |||||    
T  56453926 atttagagagataaagacacataaaaagtaaaaaataatgaatgatggtgggacccacttaatgataggacccaccacctattttttgtgtctatctct 56453828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 39862516 - 39862584
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| | ||||||||| ||||||||| || || ||||||||||||||| |||||    
T  39862516 aaatataattaatgatggtggaactcatttagtgataggacacaccatctattttttgtgtctatctct 39862584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 56558278 - 56558346
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| |||||||||||| || ||||||||||||||| |||||    
T  56558278 aaatataattaatgatggtgggacccacttagtgataggacccaccatctattttttgtgtctatctct 56558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 274
Target Start/End: Complemental strand, 37002372 - 37002257
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| | |||||| ||| ||| ||||||    
T  37002372 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggatccaccacttatttt 37002273  T
Q  259 ttgtgtctctctcttt 274  Q
    |||||||| |||||||    
T  37002272 ttgtgtctatctcttt 37002257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 5524404 - 5524514
Alignment:
Q  162 tccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttg 261  Q
    ||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||||| ||| ||||||||     
T  5524404 tccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttactgataggacccaccacttatttttta 5524503  T
Q  262 tgtctctctct 272  Q
    ||||| |||||    
T  5524504 tgtctatctct 5524514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 19901994 - 19901926
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  19901994 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 19901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 56269198 - 56269084
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacaca--aaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatt 256  Q
    |||||||||| || ||||| |||||||| |||||||  ||||||   ||| ||||||||||||||| |||| || ||| || ||||||||| ||| ||||    
T  56269198 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaa-ataattaatgatggtgggacccacttagtggtaggacccaccacttatt 56269100  T
Q  257 ttttgtgtctctctct 272  Q
    |||||||||| |||||    
T  56269099 ttttgtgtctatctct 56269084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 1015975 - 1015862
Alignment:
Q  160 tctccatttctttcatttggagagatatagacaca--aaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattt 257  Q
    |||||||||| | ||||| |||||||| |||||||  ||||||   ||| ||||||||||||||| |||| ||  ||||||| ||||||| ||| |||||    
T  1015975 tctccatttcctccatttagagagataaagacacatgaaaagtaaaaaa-ataattaatgatggtgggacccacctaatgatgggacccaccacttattt 1015877  T
Q  258 tttgtgtctctctct 272  Q
    ||||||||| |||||    
T  1015876 tttgtgtctatctct 1015862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 54588829 - 54588891
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaat 236  Q
    ||||||||||||| | ||||||||| ||||| | ||||||||||||||||| ||| |||||||    
T  54588829 atttggagagataaaaacacaaaaaatcttataaataattaatgatggtagaacttatttaat 54588891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 34778420 - 34778493
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttttca 277  Q
    ||||||||||||||||||| |||| || ||| || ||||| ||| || ||||||||||||||| ||||| ||||    
T  34778420 aaatataattaatgatggtgggacccacttagtggtaggatccaccatctattttttgtgtctatctctcttca 34778493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 52030812 - 52030747
Alignment:
Q  162 tccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggac 227  Q
    |||| |||||||||||||||||||||||||| || ||   ||||| ||||||||||||||| ||||    
T  52030812 tccaattctttcatttggagagatatagacaaaataaaatttaaaaataattaatgatggtgggac 52030747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 5763238 - 5763170
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||| ||| |||||    
T  5763238 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtttctatctct 5763170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 33262628 - 33262560
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| ||||  ||||| || ||||| ||| || ||||||||||||||| |||||    
T  33262628 aaatataattaatgatggtgggacctatttagtggtaggatccaccatctattttttgtgtctatctct 33262560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 36688260 - 36688196
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||| |||| || ||| ||||||||| || ||| |||||||||||||| |||||    
T  36688260 ataattaatgatggtgggacccacttagtgataggactcaacacttattttttgtgtctatctct 36688196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 42010120 - 42010184
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||| |||| |||||| |||||||||||  ||| |||||||||| ||| |||||    
T  42010120 ataattaatgatggtgggacccatttagtgataggacccgccacttattttttgtatctatctct 42010184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 30567900 - 30567973
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttttca 277  Q
    ||||||||||||||||| | | || || ||| || ||||||||| || ||||||||||||||| ||||| ||||    
T  30567900 aaatataattaatgatgatggaacccacttagtggtaggacccaccatctattttttgtgtctatctctcttca 30567973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 28229515 - 28229416
Alignment:
Q  162 tccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttg 261  Q
    |||||||||| ||||| ||||||||||||||||||||     ||| | |||||||||||||  |||||||||||||||||||| || |||||||||||||    
T  28229515 tccatttcttccatttagagagatatagacacaaaaa-----aaaaaaaattaatgatggtgagactcatttaatgataggactcaccacctattttttg 28229421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 32577476 - 32577570
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcaccta 254  Q
    |||||||||||||  ||||||||||||| ||||||||||| |||| || | ||||||||||||| | |||||||||||||||||||||| ||||||    
T  32577476 ttctccatttcttctatttggagagataaagacacaaaaa-tcttgaaaaaaattaatgatggtggaactcatttaatgataggacccaccaccta 32577570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 49679391 - 49679278
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| |||||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| |||||| |||||||||||  ||| ||||||    
T  49679391 ttctccatttgtttcatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccatttagtgataggacccgccacttatttt 49679292  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  49679291 ttgtgtctatctct 49679278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 33338288 - 33338186
Alignment:
Q  162 tccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttg 261  Q
    |||||||||| | |||| ||||||| ||||||||||| |||| || ||| ||||||||| |  ||||||||||||||||||||||| | |||||||| ||    
T  33338288 tccatttcttccgtttgaagagataaagacacaaaaa-tcttgaaaatagttaatgatgatgagactcatttaatgataggacccacctcctattttgtg 33338190  T
Q  262 tgtc 265  Q
    ||||    
T  33338189 tgtc 33338186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 48950597 - 48950671
Alignment:
Q  192 acaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||| |||| || |||||||||||||||  ||||||||||||||||||| ||| |||||||||| |||||||    
T  48950597 acaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggatccaccacctattttatgtgtct 48950671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 31523789 - 31523676
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| | |||||||||| ||| ||||||    
T  31523789 ttctccatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtaataggacccaccacttatttt 31523690  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  31523689 ttgtgtctatctct 31523676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 19830507 - 19830445
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||||||||||||||| |||| || |||||| ||||||||| || |||||||||||||||    
T  19830507 aaatataattaatgatggtgggacccacttaatggtaggacccaccatctattttttgtgtct 19830445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 33979903 - 33980005
Alignment:
Q  174 atttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctctt 273  Q
    |||| |||||||||| | |||| || ||||||| |||||||||||| ||  |||| ||||||||||||||  || ||  |||||||||||||| ||||||    
T  33979903 atttagagagatatatatacaataaatcttaaaaataattaatgatagtgagacttatttaatgataggattcaccatttattttttgtgtctatctctt 33980002  T
Q  274 ttc 276  Q
    |||    
T  33980003 ttc 33980005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 277
Target Start/End: Original strand, 42613034 - 42613152
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||| ||  |||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||||| ||| ||||||    
T  42613034 ttctccatttgttctatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccaccacttatttt 42613133  T
Q  259 ttgtgtctctctcttttca 277  Q
    || ||||| ||||| ||||    
T  42613134 ttttgtctatctctcttca 42613152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 2229982 - 2230050
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| | |  || ||| || |||||||||||| ||||||||||||||| |||||    
T  2229982 aaatataattaatgatggtggaaaccacttagtggtaggacccatcatctattttttgtgtctatctct 2230050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 34373661 - 34373593
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || |||||||| |||||| |||||    
T  34373661 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctatttttagtgtctatctct 34373593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 34373830 - 34373898
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| ||||  | ||| || ||||||||| || ||||||||||||||| |||||    
T  34373830 aaatataattaatgatggtgggacctaattagtggtaggacccaccatctattttttgtgtctatctct 34373898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 54911658 - 54911726
Alignment:
Q  209 taattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttttca 277  Q
    |||||||||||||| | |||||||||||| |||||||||  ||||||||| ||| ||| ||||| ||||    
T  54911658 taattaatgatggtggaactcatttaatggtaggacccactacctattttatgtctctatctctcttca 54911726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 323
Target Start/End: Complemental strand, 28229391 - 28229362
Alignment:
Q  294 atttattttaataaatggagaggatctcaa 323  Q
    ||||||||||||||||||||||||||||||    
T  28229391 atttattttaataaatggagaggatctcaa 28229362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 271
Target Start/End: Complemental strand, 24413402 - 24413291
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttt 259  Q
    |||| ||||||| ||||| ||| ||||  |||||||||| |||| || ||||||||||||||| |||| ||||||||||||||||||| || | ||||||    
T  24413402 tctcaatttcttccattttgagggataaggacacaaaaaatcttgaaaataattaatgatggtgggacccatttaatgataggacccaccatccattttt 24413303  T
Q  260 tgtgtctctctc 271  Q
    ||||||| ||||    
T  24413302 tgtgtctatctc 24413291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 194 - 260
Target Start/End: Complemental strand, 49944054 - 49943989
Alignment:
Q  194 aaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttttt 260  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  49944054 aaaaaatcttaaa-ataattaatgatggtaggactcatttaataataggacccatcatctatttttt 49943989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 731 - 808
Target Start/End: Complemental strand, 26006516 - 26006439
Alignment:
Q  731 tagtaacttgattcagtcataattgtcgaagttttctgactaaaat-aatcaataaacctttcacttgttgagaccatc 808  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||| ||| || |||||||||||    
T  26006516 tagtaacttgattcagtcataattgtctaag-tttctgactgaaataaatcaataaccctctcatttcttgagaccatc 26006439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 1358489 - 1358406
Alignment:
Q  182 agatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||| ||||||||| |||||||||||||||||||||||  |||| |||  |||||||||  ||  |||||||||||||||||    
T  1358489 agatataaacacaaaaaatcttaaatataattaatgatggtgagacttattcgatgatagga-tcacaacctattttttgtgtct 1358406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 36700942 - 36700831
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactc-atttaatgataggacccatcacctattt 257  Q
    ||||| |||||||| ||||||||||||| ||||||||||| | || || ||||||||||||||| | | || |||||||||||| | ||| || | ||||    
T  36700942 ttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggt-gaaatctatttaatgatagaatccaccatcaattt 36700844  T
Q  258 tttgtgtctctct 270  Q
    ||| |||||||||    
T  36700843 tttatgtctctct 36700831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 36717046 - 36716935
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactc-atttaatgataggacccatcacctattt 257  Q
    ||||| |||||||| ||||||||||||| ||||||||||| | || || ||||||||||||||| | | || |||||||||||| | ||| || | ||||    
T  36717046 ttctcaatttcttttatttggagagatacagacacaaaaaattttgaaaataattaatgatggt-gaaatctatttaatgatagaatccaccatcaattt 36716948  T
Q  258 tttgtgtctctct 270  Q
    ||| |||||||||    
T  36716947 tttatgtctctct 36716935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 50294139 - 50294071
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    |||||||||||||||||||||||  || ||| || ||||||||| || ||||||||||||||| |||||    
T  50294139 aaatataattaatgatggtaggatccacttagtggtaggacccaccatctattttttgtgtctatctct 50294071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 12380986 - 12380924
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||||||||||||||| ||||||| ||| || ||| ||||| || |||||||||||||||    
T  12380986 aaatataattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12380924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 12385053 - 12384991
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||||||||||||||| ||||||| ||| || ||| ||||| || |||||||||||||||    
T  12385053 aaatataattaatgatggtgggactcacttagtggtagaacccaccatctattttttgtgtct 12384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 32887910 - 32887872
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaa 198  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  32887910 tctccatttctttcatttggagagatatagactcaaaaa 32887872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 30077765 - 30077652
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    ||||| |||| || ||||| |||| ||| ||||||| |||   | ||| |||||||||||| || ||||||| ||| |||||| ||||| ||| ||||||    
T  30077765 ttctctatttgttccatttagagaaataaagacacataaaaagtaaaaaataattaatgatagtgggactcacttagtgatagaacccaccacttatttt 30077666  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  30077665 ttgtgtctatctct 30077652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 12151766 - 12151834
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || |||||||||  | ||||||||||||||| |||||    
T  12151766 aaatataattaatgatggtgggacccacttagtggtaggacccacaatctattttttgtgtctttctct 12151834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 33441536 - 33441600
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||| ||||||||| |||| |||| || ||| ||| |||||||||||||| |||||    
T  33441536 ataattaatgatgataggactcaattaaagatatgatccaccacttattttttgtgtctatctct 33441600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 52280146 - 52280047
Alignment:
Q  173 catttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||  || ||| |||||||||||| ||| |||||||| ||||| |||||    
T  52280146 catttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggatccacttagtgataggacccaccacttattttttatgtctatctct 52280047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 42720889 - 42720847
Alignment:
Q  158 attctccatttctttcatttggagagatatagacacaaaaagt 200  Q
    |||||||||||||||||||| |||||||| ||||||| |||||    
T  42720889 attctccatttctttcatttagagagataaagacacataaagt 42720847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 26749664 - 26749556
Alignment:
Q  164 catttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtg 263  Q
    ||||| |||||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||||||||| |||||||||||    
T  26749664 catttgtttcatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccatcacttattttttgtg 26749565  T
Q  264 tctctctct 272  Q
    ||| |||||    
T  26749564 tctatctct 26749556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 24557400 - 24557490
Alignment:
Q  173 catttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtg 263  Q
    ||||| |||| ||||||||||||||| |||| || |||||||||||| ||  |||  ||||||||||| ||||||||||||||||| ||||    
T  24557400 catttagagatatatagacacaaaaattcttgaaaataattaatgatagtcagacgtatttaatgatatgacccatcacctattttatgtg 24557490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 274
Target Start/End: Original strand, 21492730 - 21492844
Alignment:
Q  162 tccatttctttcatttggagagatatagacaca-aaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcaccta-ttttt 259  Q
    |||||||||| |||||||||||||| ||||||| |||| |||| || |||| |||||||||| ||||  ||||||| |||| |  || |||||| |||||    
T  21492730 tccatttcttccatttggagagataaagacacacaaaaatcttgaaaataagtaatgatggtgggacctatttaataatagtattcaccacctatttttt 21492829  T
Q  260 tgtgtctctctcttt 274  Q
    ||||||| |||||||    
T  21492830 tgtgtctatctcttt 21492844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 10672588 - 10672520
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| ||||||| ||| || ||||| ||| || ||||||||||||||| |||||    
T  10672588 aaatataattaatgatggtgggactcacttagtggtaggatccaccatctattttttgtgtctatctct 10672520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 28069718 - 28069786
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  28069718 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctttctct 28069786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 30426745 - 30426677
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  30426745 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 30426677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 15901454 - 15901520
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttt 274  Q
    |||||||||||| ||| ||| |||||||| ||||||||||  ||||||||||||| ||| |||||||    
T  15901454 ataattaatgatagtaagacccatttaataataggacccacgacctattttttgtatctatctcttt 15901520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 34612520 - 34612631
Alignment:
Q  162 tccatttctttcatttggagagatatagacaca--aaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttt 259  Q
    ||||||| || ||||| |||||||| |||||||  ||||||   ||| |||||||||||||||  ||| || ||| |||||||||||| ||| |||||||    
T  34612520 tccatttgttccatttagagagataaagacacataaaaagtaaaaaa-ataattaatgatggtgagacccacttagtgataggacccaccacttattttt 34612618  T
Q  260 tgtgtctctctct 272  Q
    ||||||| |||||    
T  34612619 tgtgtctatctct 34612631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 36991355 - 36991423
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || |||||||||||| |||||| || ||||| |||||    
T  36991355 aaatataattaatgatggtgggacccacttagtggtaggacccatcatctatttcttatgtctatctct 36991423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 1937276 - 1937162
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacct-attt 257  Q
    |||||||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| |  ||| |||||||||||| ||| |  |||    
T  1937276 ttctccatttgttccatttagagagatagagacacataaaaagtaaaaaataattaatgatggtgggacccgcttagtgataggacccaccacttgtttt 1937177  T
Q  258 tttgtgtctctctct 272  Q
    ||||||||| |||||    
T  1937176 tttgtgtctatctct 1937162  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 16313957 - 16314023
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttt 274  Q
    |||||||||||| ||| | | |||||||| ||||||||||  ||||||||||||| ||| |||||||    
T  16313957 ataattaatgatagtaagccccatttaataataggacccacaacctattttttgtatctatctcttt 16314023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 33709154 - 33709192
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaa 198  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  33709154 tctccatttctttcatttggagagataaaaacacaaaaa 33709192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 24557252 - 24557203
Alignment:
Q  209 taattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||||||||||| | ||||||| |||||| |||||||||| |||||||||    
T  24557252 taattaatgatgatgggactcacttaatggtaggacccattacctatttt 24557203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 27095956 - 27096051
Alignment:
Q  156 ctattctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacc 252  Q
    |||||||||||||||||||||| |||||||| | ||| |||   | | ||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  27095956 ctattctccatttctttcatttagagagataaaaacataaattttttgaaa-ataattaatgatggtgagactcatttaatgataggacccatcacc 27096051  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 272
Target Start/End: Original strand, 24484838 - 24484946
Alignment:
Q  164 catttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtg 263  Q
    ||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||||| ||| |||||||||||    
T  24484838 catttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccaccacttattttttgtg 24484937  T
Q  264 tctctctct 272  Q
    ||| |||||    
T  24484938 tctatctct 24484946  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 272
Target Start/End: Complemental strand, 2142413 - 2142301
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctattttt 259  Q
    |||||||||| | ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| | || ||  ||||||| ||||||| ||| |||||||    
T  2142413 tctccatttcctccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtggaacccacctaatgatgggacccaccacttattttt 2142314  T
Q  260 tgtgtctctctct 272  Q
    ||||||| |||||    
T  2142313 tgtgtctatctct 2142301  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 4804447 - 4804515
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  4804447 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 4804515  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 17944161 - 17944229
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| |||||| || ||||||| | || ||||||||||||||| |||||    
T  17944161 aaatataattaatgatggtgggacccatttagtggtaggacctaccatctattttttgtgtctatctct 17944229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 27826537 - 27826605
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||||||| |||||    
T  27826537 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtctatctct 27826605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 32254103 - 32254040
Alignment:
Q  208 ataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctc 271  Q
    |||||||||||| || ||||||| |||||||||||||||| ||||| |||||| ||||| ||||    
T  32254103 ataattaatgatagtgggactcacttaatgataggacccaccaccttttttttttgtctatctc 32254040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Complemental strand, 21159445 - 21159383
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtct 266  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || |||||||||||||||    
T  21159445 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtgtct 21159383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Complemental strand, 1249222 - 1249154
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| |||| || ||| || ||||||||| || ||||||||||| | |||||||    
T  1249222 aaatataattaatgatggtgggacccacttagtggtaggacccaccatctattttttgtctgtctctct 1249154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 28696770 - 28696732
Alignment:
Q  160 tctccatttctttcatttggagagatatagacacaaaaa 198  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  28696770 tctccatttctatcatttggagagataaagacacaaaaa 28696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 29698162 - 29698220
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgt 262  Q
    ||||||||||||||||||| |||| || |||||| ||||| ||| || |||||||||||    
T  29698162 aaatataattaatgatggtgggacccacttaatggtaggatccaccatctattttttgt 29698220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 2614517 - 2614472
Alignment:
Q  193 caaaaagtcttaaatataattaatgatggtaggactcatttaatga 238  Q
    |||||| ||||||| |||||||||||||||  ||||||||||||||    
T  2614517 caaaaaatcttaaaaataattaatgatggtgtgactcatttaatga 2614472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 272
Target Start/End: Complemental strand, 17427 - 17314
Alignment:
Q  159 ttctccatttctttcatttggagagatatagacacaaaaagtcttaaatataattaatgatggtaggactcatttaatgataggacccatcacctatttt 258  Q
    |||| ||||| || ||||| |||||||| ||||||| |||   | ||| ||||||||||||||| |||| || ||| |||||||||||| ||| ||||||    
T  17427 ttcttcatttgttccatttagagagataaagacacataaaaagtaaaaaataattaatgatggtgggacccacttagtgataggacccagcacttatttt 17328  T
Q  259 ttgtgtctctctct 272  Q
    |||||||| |||||    
T  17327 ttgtgtctatctct 17314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 6511 - 6441
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctcttt 274  Q
    ||||||||||||||||||| | || |||||| |  ||||||||| || ||||||||||||||| |||||||    
T  6511 aaatataattaatgatggttgtacccatttagttgtaggacccaccatctattttttgtgtctgtctcttt 6441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 7146 - 7214
Alignment:
Q  204 aaatataattaatgatggtaggactcatttaatgataggacccatcacctattttttgtgtctctctct 272  Q
    ||||||||||||||||||| | || || |||||  ||||||||| || ||||||||||||||| |||||    
T  7146 aaatataattaatgatggtggaacccacttaatagtaggacccaccatctattttttgtgtctatctct 7214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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