View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5610_high_2 (Length: 353)
Name: NF5610_high_2
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5610_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 32152207 - 32151875
Alignment:
| Q |
1 |
acagaaactatagtttttgctcatggttatggaacagaccaatcaatatgggacaaaatcacaccttattttactgnnnnnnnctatagagttgttctat |
100 |
Q |
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| T |
32152207 |
acagaaactatagtttttgctcatggttatggaacagaccaatcaatatgggacaaaatcacaccttattttactgaaaaaaactatagagttgttctat |
32152108 |
T |
|
| Q |
101 |
ttgattggcctttttctggtgctattaaagatcaaaatctttatgacccttcaaagtattcttctttagatgcttttgcagatgacttgatcagtttatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32152107 |
ttgattggcctttttctggtgctattaaagatcaaaatctttataacccttcaaagtattcttctttagatgcttttgcagatgacttgatcagtttatt |
32152008 |
T |
|
| Q |
201 |
ggatcaaatggagcttaaagttgttacccttgttggtcattccatgtctggtatgataagttgcttagcttccattaaaagacctcaacttttcaagagg |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32152007 |
ggatcaaatggagcttaaagttgttacctttgttggtcattccatgtctggtatgattagttgcttagcttccattaaaagacctcaacttttcaagagg |
32151908 |
T |
|
| Q |
301 |
cttattcttgttggtgcttccccaaggtatatt |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
32151907 |
cttattcttgttggtgcttccccaaggtatatt |
32151875 |
T |
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