View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5610_high_4 (Length: 247)
Name: NF5610_high_4
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5610_high_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 15398681 - 15398444
Alignment:
| Q |
10 |
aatatctaaaaatctggaactctgcacaaaatggcaggcacaaaataataaataatcttattgatctttatacaaagtaaagaagggactatacatagaa |
109 |
Q |
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| T |
15398681 |
aatatctaaaaatctggaactctgcacaaaatggcaggcacaaaataataaataatcttattgatctttatacaaagtaaagaagggactatacatagaa |
15398582 |
T |
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| Q |
110 |
aacttgaccaacatttaagagactctcatgaggaatattgaatatcacactattttctctgcatatcttcctaagaaatgcatatatataatcaacaact |
209 |
Q |
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| T |
15398581 |
aacttgaccaacatttaagagactctcatgaggaatattgaatatcacactattttctctgcatattttcctaagaaatgcatatatataatcaacatct |
15398482 |
T |
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| Q |
210 |
attttcttgtagaatcttgaatccctactagccctcac |
247 |
Q |
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| T |
15398481 |
attttcttgtagaatcttgaatttctactagccctcac |
15398444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 15390079 - 15389842
Alignment:
| Q |
10 |
aatatctaaaaatctggaactctgcacaaaatggcaggcacaaaataataaataatcttattgatctttatacaaagtaaagaagggactatacatagaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15390079 |
aatatctaaaaatctggaactctgcacaaaatggcaggcacaaaataataaataatcttattgatctttatacaaagtaaagaagggactatacatagaa |
15389980 |
T |
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| Q |
110 |
aacttgaccaacatttaagagactctcatgaggaatattgaatatcacactattttctctgcatatcttcctaagaaatgcatatatataatcaacaact |
209 |
Q |
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| T |
15389979 |
aacttgaccaacatttaagagactctcatgaggaatattgaagatcacactattttctctgcatattttcctaagaaatgcatatatataatcaacagct |
15389880 |
T |
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| Q |
210 |
attttcttgtagaatcttgaatccctactagccctcac |
247 |
Q |
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| T |
15389879 |
attttcttgtagaatcttgaatttctactagccctcac |
15389842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 218
Target Start/End: Original strand, 38665404 - 38665524
Alignment:
| Q |
98 |
ctatacatagaaaacttgaccaacatttaagagactctcatgaggaatattgaatatcacactattttctctgcatatcttcctaagaaatgcatatata |
197 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
38665404 |
ctatacatagaatatctgaccaacatttaagagactctcatgaggaacattgaagatcacactattttccctgcatattttcctaagaaatgcatatatg |
38665503 |
T |
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| Q |
198 |
taatcaacaactattttcttg |
218 |
Q |
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| T |
38665504 |
taatcaacagctactttcttg |
38665524 |
T |
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