View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5610_low_1 (Length: 460)

Name: NF5610_low_1
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5610_low_1
NF5610_low_1
[»] chr5 (1 HSPs)
chr5 (1-441)||(41628412-41628852)
[»] chr2 (24 HSPs)
chr2 (5-128)||(30393852-30393975)
chr2 (340-441)||(30394059-30394160)
chr2 (20-128)||(30383716-30383824)
chr2 (309-435)||(23767620-23767746)
chr2 (340-441)||(30383930-30384031)
chr2 (309-435)||(23796789-23796915)
chr2 (31-125)||(30467833-30467927)
chr2 (21-128)||(8381668-8381775)
chr2 (328-435)||(23784333-23784440)
chr2 (29-145)||(30429870-30429983)
chr2 (29-144)||(30423837-30423949)
chr2 (31-145)||(30436043-30436154)
chr2 (350-441)||(30436363-30436454)
chr2 (334-440)||(8380146-8380252)
chr2 (58-145)||(30482150-30482234)
chr2 (366-441)||(30424128-30424203)
chr2 (366-439)||(30468121-30468194)
chr2 (62-128)||(23767286-23767352)
chr2 (366-439)||(30430161-30430234)
chr2 (350-441)||(30482837-30482928)
chr2 (62-128)||(23784775-23784841)
chr2 (62-98)||(23796479-23796515)
chr2 (31-125)||(30474960-30475054)
chr2 (335-441)||(30475219-30475325)


Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 41628852 - 41628412
Alignment:
Q  1 ctttccaaagaataatcataagattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41628852 ctttccaaagaataatcataagattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaacccc 41628753  T
Q  101 gctttccattcagaaaaattgaaggttaatagtttccctttactaaataaatatttagaaattgtgcnnnnnnnccttcatttttggccttcaaagtaca 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  41628752 gctttccattcagaaaaattgaaggttattagtttccctttactaaataaatatttagaaattgtgctttttttccttcatttttggccttcaaagtaca 41628653  T
Q  201 tttctgtaaactacatagttttgtttataagctaacatatatgctcttaaatctgaatgtttatgcactaagtttgactcaaaatttgaactattcctta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41628652 tttctgtaaactacatagttttgtttataagctaacatatatgctcttaaatctgaatgtttatgcaccaagtttgactcaaaatttgaactattcctta 41628553  T
Q  301 tttctttattatttattatactataggttatgacaccaactttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatgg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41628552 tttctttattatttattatactataggttatgacaccaactttcttcacaagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatgg 41628453  T
Q  401 atcatgtgaaatagacatatggccttcccttcagaatttgg 441  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  41628452 atcatgtgaaatagatatatggccttcccttcagaatttgg 41628412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 30393852 - 30393975
Alignment:
Q  5 ccaaagaataatcataagattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctt 104  Q
    ||||||| |||  ||||||||||||||||||||| |||||||||||| |||  || ||||||||| ||||||||||||||||||||||||||||||||||    
T  30393852 ccaaagactaactataagattttcaagttactagctagtggtcttgctagttatgggggagaaaaatggagcaagcatagaaggctaatcaaccctgctt 30393951  T
Q  105 tccattcagaaaaattgaaggtta 128  Q
    |||||| |||| ||||||||||||    
T  30393952 tccatttagaacaattgaaggtta 30393975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 340 - 441
Target Start/End: Original strand, 30394059 - 30394160
Alignment:
Q  340 ctttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaattt 439  Q
    ||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  30394059 ctttcttcacaagttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaattt 30394158  T
Q  440 gg 441  Q
    ||    
T  30394159 gg 30394160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 30383716 - 30383824
Alignment:
Q  20 aagattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaat 119  Q
    ||||||||||||||||||| || ||  ||||| | |  ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |    
T  30383716 aagattttcaagttactagctaatgcacttgctaattatgagggagaaaagtggagcaagcatagaaagctaatcaaccctgctttccatttagaaaagt 30383815  T
Q  120 tgaaggtta 128  Q
    |||||||||    
T  30383816 tgaaggtta 30383824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 309 - 435
Target Start/End: Original strand, 23767620 - 23767746
Alignment:
Q  309 ttatttattatactataggttatgacaccaactttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtg 408  Q
    |||||||||| || |||| ||||||||||||| ||||| | ||| ||||||||||| ||||| || ||||| |||| ||||||| || ||||||| | ||    
T  23767620 ttatttattacaccatagattatgacaccaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaaatggatcctctg 23767719  T
Q  409 aaatagacatatggccttcccttcaga 435  Q
    |||||||||||||||||||||||||||    
T  23767720 aaatagacatatggccttcccttcaga 23767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 340 - 441
Target Start/End: Original strand, 30383930 - 30384031
Alignment:
Q  340 ctttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaattt 439  Q
    ||||||||| ||||||||| ||||| ||||  ||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||| || |||||    
T  30383930 ctttcttcacaagttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaattt 30384029  T
Q  440 gg 441  Q
    ||    
T  30384030 gg 30384031  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 435
Target Start/End: Original strand, 23796789 - 23796915
Alignment:
Q  309 ttatttattatactataggttatgacaccaactttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtg 408  Q
    |||||||||| || |||| ||||||||||||| ||||| | ||| ||||||||||| ||||| || ||||| |||| ||||||| ||  |||| | | ||    
T  23796789 ttatttattacaccatagattatgacaccaacattcttgaaaagctgcaacgatttgattagcaattgggaagaaacgttgtcttcaagtggagcctctg 23796888  T
Q  409 aaatagacatatggccttcccttcaga 435  Q
    |||||||||||||||||||||||||||    
T  23796889 aaatagacatatggccttcccttcaga 23796915  T

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Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 30467833 - 30467927
Alignment:
Q  31 gttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaagg 125  Q
    |||||||| || |||||||| |||||||||||||||| ||||||||||||| |||| | ||||||| ||||| ||||||| ||||||||||||||    
T  30467833 gttactagctaatggtcttgtaagtcttgagggagaacagtggagcaagcacagaaagataatcaatcctgcattccatttagaaaaattgaagg 30467927  T

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Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 8381775 - 8381668
Alignment:
Q  21 agattttcaagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaatt 120  Q
    |||||||||| || ||| |||||||||||  || ||  ||||||||||||||||| |||||||||||| |||| ||| |||||||||| | |||||||||    
T  8381775 agattttcaaatttctatttagtggtcttataattcacgagggagaaaagtggagaaagcatagaaggttaatgaacgctgctttccagttagaaaaatt 8381676  T
Q  121 gaaggtta 128  Q
    ||||||||    
T  8381675 gaaggtta 8381668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 435
Target Start/End: Complemental strand, 23784440 - 23784333
Alignment:
Q  328 ttatgacaccaactttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttc 427  Q
    ||||||||||||| ||||| | ||| ||||| ||||| ||||| || |||||  ||||||||||| || |||||||||||||||| ||| ||||||||||    
T  23784440 ttatgacaccaacattcttgaaaagctgcaatgatttgattagcaattgggaaaaaatgttgtcttcaaatggatcatgtgaaatggacgtatggccttc 23784341  T
Q  428 ccttcaga 435  Q
    ||||||||    
T  23784340 ccttcaga 23784333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 30429870 - 30429983
Alignment:
Q  29 aagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaaggtta 128  Q
    |||||||||| || ||| |||||||||| |||||||||| ||||||||||||| |||| | | ||||||||||| ||||||  ||||||||||||||       
T  30429870 aagttactagctaatggccttgcaagtcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatgtagaaaaattgaagg--- 30429966  T
Q  129 atagtttccctttacta 145  Q
    | |||||||||||||||    
T  30429967 aaagtttccctttacta 30429983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 30423837 - 30423949
Alignment:
Q  29 aagttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaaggtta 128  Q
    |||||||||| || |||||||  ||||| |||||||||| ||||||||||||| |||| | | ||||||||||| ||||||| ||||||||||||||       
T  30423837 aagttactagctaatggtcttataagtcatgagggagaacagtggagcaagcacagaaagattatcaaccctgcattccatttagaaaaattgaagg--- 30423933  T
Q  129 atagtttccctttact 144  Q
    | ||||||||||||||    
T  30423934 aaagtttccctttact 30423949  T

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Target: chr2; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 30436043 - 30436154
Alignment:
Q  31 gttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaaggttaat 130  Q
    |||||||| | ||||||||| | |||||||||||||| ||||||||||||| |||| | |||| || ||||| ||||||| |||||||||||||||        
T  30436043 gttactaggttgtggtcttgtatgtcttgagggagaacagtggagcaagcacagaaagataataaatcctgcattccatttagaaaaattgaaggt---a 30436139  T
Q  131 agtttccctttacta 145  Q
    |||||||||||||||    
T  30436140 agtttccctttacta 30436154  T

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Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 441
Target Start/End: Original strand, 30436363 - 30436454
Alignment:
Q  350 aagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaatttgg 441  Q
    ||||||| | ||||| ||||| ||||||||| ||||||||||  ||||||||||||||||||| ||| ||||||||| |||||| |||||||    
T  30436363 aagttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttgg 30436454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 440
Target Start/End: Complemental strand, 8380252 - 8380146
Alignment:
Q  334 caccaactttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttca 433  Q
    |||||| |||| ||| ||||||||  ||| | ||||| |||||||||  || ||||||  ||||||||||| ||||||||||||||||||||||||| ||    
T  8380252 caccaagtttcctcacaagttgcattgatatgattagcaaatgggagtcaacgttgtcatcagatggatcaggtgaaatagacatatggccttccctaca 8380153  T
Q  434 gaatttg 440  Q
    |||||||    
T  8380152 gaatttg 8380146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 30482150 - 30482234
Alignment:
Q  58 tgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaaggttaatagtttccctttacta 145  Q
    |||||| |||||||||||||||||||||| | |||| || ||||| ||||||| |||||||||||||||   ||||||||||||||||    
T  30482150 tgagggtgaaaagtggagcaagcatagaaagataataaatcctgcattccatttagaaaaattgaaggt---tagtttccctttacta 30482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 366 - 441
Target Start/End: Original strand, 30424128 - 30424203
Alignment:
Q  366 attagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaatttgg 441  Q
    ||||| ||||||||| |||||||| || ||||||||||||||||||| ||| ||||||||| |||||| |||||||    
T  30424128 attagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttgg 30424203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 30468121 - 30468194
Alignment:
Q  366 attagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaattt 439  Q
    ||||| ||||||||| ||||||||||  ||||||||||||||||||| ||| ||||||||| |||||| |||||    
T  30468121 attagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattt 30468194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 23767286 - 23767352
Alignment:
Q  62 ggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaaggtta 128  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||    ||||||||||||||||    
T  23767286 ggagaaaagtggaccaagcatagaaggataatcaaccctgcttttcacatggaaaaattgaaggtta 23767352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 439
Target Start/End: Original strand, 30430161 - 30430234
Alignment:
Q  366 attagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaattt 439  Q
    ||||| ||||||||| |||||||| || ||||||||||||||||||| ||  ||||||||| |||||| |||||    
T  30430161 attagcaaatgggagaaaatgttggcttcagatggatcatgtgaaatggaagtatggcctttccttcaaaattt 30430234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 350 - 441
Target Start/End: Original strand, 30482837 - 30482928
Alignment:
Q  350 aagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcagaatttgg 441  Q
    ||||||||| ||| | ||||| |||||||||| |||||| ||   |||||||||||||||||| ||  ||||||||||| |||| |||||||    
T  30482837 aagttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttgg 30482928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 23784841 - 23784775
Alignment:
Q  62 ggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaaggtta 128  Q
    ||||||||||||||||||||||||||  ||||||||||||| || ||    ||||||||||||||||    
T  23784841 ggagaaaagtggagcaagcatagaagaataatcaaccctgcgtttcacatggaaaaattgaaggtta 23784775  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 23796479 - 23796515
Alignment:
Q  62 ggagaaaagtggagcaagcatagaaggctaatcaacc 98  Q
    ||||||||||||||||||||||||||| |||||||||    
T  23796479 ggagaaaagtggagcaagcatagaaggataatcaacc 23796515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 30474960 - 30475054
Alignment:
Q  31 gttactagttagtggtcttgcaagtcttgagggagaaaagtggagcaagcatagaaggctaatcaaccctgctttccattcagaaaaattgaagg 125  Q
    |||||||| || |||||||| ||  || ||||| ||||||||||||||||| |||| |||||| || || || ||| ||  ||||||||||||||    
T  30474960 gttactagctaatggtcttgtaaacctcgagggcgaaaagtggagcaagcacagaaagctaattaatccggcattcaatatagaaaaattgaagg 30475054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 441
Target Start/End: Original strand, 30475219 - 30475325
Alignment:
Q  335 accaactttcttcataagttgcaacgatttaattagaaaatgggaggaaatgttgtctccagatggatcatgtgaaatagacatatggccttcccttcag 434  Q
    ||||| |||||||| ||||||  | ||||| ||||  |||||||||  |||||||||  ||||||||||||||||| | ||  | ||||||| ||||||     
T  30475219 accaattttcttcaaaagttgtgatgatttgattaccaaatgggagagaatgttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaa 30475318  T
Q  435 aatttgg 441  Q
    |||||||    
T  30475319 aatttgg 30475325  T

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