View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5610_low_3 (Length: 296)
Name: NF5610_low_3
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5610_low_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 37050527 - 37050265
Alignment:
| Q |
19 |
acctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccat |
118 |
Q |
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| T |
37050527 |
acctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccat |
37050428 |
T |
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| Q |
119 |
gagacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggta |
218 |
Q |
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| T |
37050427 |
gagacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacatcgtgttgagtggtggttcaacaatgttccctggta |
37050328 |
T |
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| Q |
219 |
ttgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggttg |
281 |
Q |
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| T |
37050327 |
ttgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggttg |
37050265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 8689848 - 8690107
Alignment:
| Q |
20 |
cctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccatg |
119 |
Q |
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| T |
8689848 |
cctgatggacaggtgatcaccatcggagacgagcgtttcagatgtccagaggtcctgttccaaccatctatgataggaatggaagcagcaggcattcacg |
8689947 |
T |
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| Q |
120 |
agacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggtat |
219 |
Q |
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| T |
8689948 |
agaccacatacaactccatcatgaagtgcgatgttgatatcaggaaagacttgtacggtaacattgtgctttcaggaggaactaccatgttcccaggcat |
8690047 |
T |
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| Q |
220 |
tgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggt |
279 |
Q |
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| T |
8690048 |
tgctgatagaatgagcaaggaaatttctgctttggccccaagtagcatgaagatcaaggt |
8690107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 68462 - 68722
Alignment:
| Q |
19 |
acctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccat |
118 |
Q |
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||||||||| ||||||||||| || ||||| ||| | ||||| || || ||||| | ||||||||||||||||| || |||||| |||||||||| ||| |
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| T |
68462 |
acctgatggacaggtgatcacaataggtgccgaacgtttccgttgtcctgaagtactcttccagccatccatgattggtatggaagctcctggtatacat |
68561 |
T |
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| Q |
119 |
gagacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggta |
218 |
Q |
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| T |
68562 |
gaaacaacatacaattcaatcatgaagtgtgatgttgatattagaaaggatctctatggaaacatcgtattgagtggtggtacgactatgttccccggca |
68661 |
T |
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| Q |
219 |
ttgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggt |
279 |
Q |
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| T |
68662 |
ttgctgataggatgagcaaggagatcacagcattggcaccaagtagcatgaaaattaaggt |
68722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 43647212 - 43646951
Alignment:
| Q |
20 |
cctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccatg |
119 |
Q |
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|||||||| || || ||||| || || ||||| || ||||| ||||||||||| | ||||| ||||| ||||| || |||||| || |||| || || | |
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| T |
43647212 |
cctgatggacaagttatcacaattggagctgagaggttccgttgcccagaagtccttttccaaccatcaatgatcggaatggaagctgctggaattcacg |
43647113 |
T |
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| Q |
120 |
agacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggtat |
219 |
Q |
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|||| || | ||||| ||||||||||||||||| || || || |||||||| || || |||||||| | |||||||||||||| |||||||||||||| |
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| T |
43647112 |
agaccacctacaactctatcatgaagtgtgatgtggatatcagaaaggatctgtacggcaacattgttcttagtggtggttcaactatgttccctggtat |
43647013 |
T |
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| Q |
220 |
tgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggttg |
281 |
Q |
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| T |
43647012 |
tgctgaccgtatgagcaaggagatcactgccctggctcctagcagcatgaagattaaggttg |
43646951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 41388427 - 41388686
Alignment:
| Q |
20 |
cctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccatg |
119 |
Q |
| |
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|||||||| ||| | ||||| || |||||||| | ||||| || || || ||| | |||||||| |||||| | || |||||| || ||| || || | |
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| T |
41388427 |
cctgatggacagataatcactattggtgctgagcgtttccgttgtcctgaggttcttttccagccttccatggttggaatggaagctgttggaattcacg |
41388526 |
T |
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| Q |
120 |
agacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggtat |
219 |
Q |
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|||| |||| ||||| |||||||||||||||||||| || || ||||| || ||||| |||||||| | ||||||||| | || |||||||||||||| |
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| T |
41388527 |
agacgacatacaactcaatcatgaagtgtgatgttgatatcagaaaggacctgtatggaaacattgtccttagtggtggtactactatgttccctggtat |
41388626 |
T |
|
| Q |
220 |
tgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggt |
279 |
Q |
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|||||| |||||||||||||| ||||| || ||||| || || |||||||| |||||||| |
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| T |
41388627 |
tgctgacagaatgagcaaggaaattaccgcgttggccccaagcagcatgaagatcaaggt |
41388686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 1262191 - 1261932
Alignment:
| Q |
20 |
cctgatgggcaggtgatcacgatcggtgctgaaagattccgatgcccagaagttttgttccagccatccatgatagggatggaatctcctggtatccatg |
119 |
Q |
| |
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|||||||| ||||| || || || ||| | || |||||||| ||||| ||||| | |||||||| || | || || |||||| || |||| ||||||| |
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| T |
1262191 |
cctgatggacaggtcataacaataggttccgagagattccgttgccccgaagtactcttccagccttctctaattggtatggaagctactggaatccatg |
1262092 |
T |
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| Q |
120 |
agacaacatttaactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggtat |
219 |
Q |
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| T |
1262091 |
aaactacatacaactccatcatgaagtgtgatgttgatattaggaaggatctatatggaaatattgtgcttagtggaggttctaccatgtttcctggaat |
1261992 |
T |
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| Q |
220 |
tgctgatagaatgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggt |
279 |
Q |
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|||||| | ||||||||||| || | || | ||||| |||||||||||||||||||| |
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| T |
1261991 |
tgctgaccgtatgagcaaggaaatcagtgctcttgctccaagtagcatgaaaatcaaggt |
1261932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 279
Target Start/End: Complemental strand, 59234 - 59086
Alignment:
| Q |
131 |
aactcgatcatgaagtgtgatgttgacattaggaaggatctctatggtaacattgtgttgagtggtggttcaacaatgttccctggtattgctgatagaa |
230 |
Q |
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||||| || ||||| |||||||||||||| ||||| || || |||||||||||||| | || ||| |||| ||||| ||||| ||||||||||||| |
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| T |
59234 |
aactccataatgaaatgtgatgttgacatcaggaaagacctgtatggtaacattgtcctatcaggaggtacaaccatgtttcctggcattgctgatagaa |
59135 |
T |
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| Q |
231 |
tgagcaaggagattacagcattggctcctagtagcatgaaaatcaaggt |
279 |
Q |
| |
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|||||||||||||| | ||||| || || ||||||||||| |||||||| |
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| T |
59134 |
tgagcaaggagatttctgcattagcaccaagtagcatgaagatcaaggt |
59086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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