View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5610_low_5 (Length: 240)

Name: NF5610_low_5
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5610_low_5
NF5610_low_5
[»] chr1 (2 HSPs)
chr1 (9-183)||(3722643-3722810)
chr1 (128-179)||(32953484-32953535)
[»] chr6 (1 HSPs)
chr6 (51-183)||(29521889-29522023)
[»] chr8 (2 HSPs)
chr8 (49-183)||(37080943-37081080)
chr8 (48-106)||(35739586-35739644)
[»] chr5 (2 HSPs)
chr5 (51-162)||(41968787-41968900)
chr5 (82-183)||(27983763-27983866)
[»] scaffold0011 (1 HSPs)
scaffold0011 (82-181)||(229015-229116)
[»] chr2 (1 HSPs)
chr2 (82-183)||(36033516-36033618)
[»] chr3 (1 HSPs)
chr3 (128-183)||(1236006-1236061)
[»] chr7 (1 HSPs)
chr7 (128-183)||(7805758-7805813)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 3722810 - 3722643
Alignment:
Q  9 cgagcgattgttacagctgcggaaaaaagaacattgttatagattttggtcatcgcctcttcattaattatagttcattactccttcaattcctagatct 108  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  3722810 cgagcgatcgttacagctgcgaaaaaaagaacattgttttagattttggtcatcgcctcttcgttaattatagttcattactccttcaattccttgatct 3722711  T
Q  109 ctcctcgtccaccaactcgtaattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttagagag 183  Q
    |||||| ||      ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3722710 ctcctc-tc------ctcgtaattttggtgttgttatgtaagtgtgtaacatagataaaatgagattttagagag 3722643  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 32953484 - 32953535
Alignment:
Q  128 taattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttag 179  Q
    ||||||||| |||||| |||||||||||||||||||| ||||||||||||||    
T  32953484 taattttggcgttgttgtgtaagtgtgtaacatagatgaaatgagattttag 32953535  T

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Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 29522023 - 29521889
Alignment:
Q  51 attttggtcatcgcctcttcattaattatagttcattactccttcaattcctagatctctcctcgtccaccaactc--gtaattttggtgttgttatgta 148  Q
    |||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||   |||||||| |||| |||||||    
T  29522023 attttggtcatcacctcttctttatttacagttcattactccttcaattcctagatctctcctcctccaccgactcttttaattttgatgtttttatgta 29521924  T
Q  149 agtgtgtaacatagattaaatgagattttagagag 183  Q
     |||||||| |||||| ||||||||||||||||||    
T  29521923 tgtgtgtaaaatagataaaatgagattttagagag 29521889  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 37081080 - 37080943
Alignment:
Q  49 agattttggtcatcgcctcttcattaattatag-ttcattactccttcaattcctagatctctcctcgtccaccaactcg--taattttggtgttgttat 145  Q
    |||| ||||||||| | || || ||| |||||| |||||||||||||||||||| |||||||||||| |||||  ||||   |||||||||||||||| |    
T  37081080 agatcttggtcatcacatcctctttatttatagcttcattactccttcaattcccagatctctcctcctccactcactctcttaattttggtgttgttgt 37080981  T
Q  146 gtaagtgtgtaacatagattaaatgagattttagagag 183  Q
    | ||||||||||||||||| ||||||||||||| ||||    
T  37080980 gcaagtgtgtaacatagatgaaatgagattttaaagag 37080943  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 35739586 - 35739644
Alignment:
Q  48 tagattttggtcatcgcctcttcattaattatagttcattactccttcaattcctagat 106  Q
    ||||||||||||||| ||||||| ||  |||  |||||||||||||||||||| |||||    
T  35739586 tagattttggtcatcacctcttctttctttacggttcattactccttcaattcttagat 35739644  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 41968787 - 41968900
Alignment:
Q  51 attttggtcatcgcctcttcattaattatagttcattactccttcaattcctagatctctcctcgtccaccaa--ctcgtaattttggtgttgttatgta 148  Q
    |||||||||||| ||||||| ||| ||| |||||||||||  |||||||| ||||||||||||| |||||  |  ||| |||||||||||||||||||||    
T  41968787 attttggtcatcacctcttctttatttacagttcattactagttcaattcttagatctctcctcctccacagactctcttaattttggtgttgttatgta 41968886  T
Q  149 agtgtgtaacatag 162  Q
    ||| ||||||||||    
T  41968887 agtatgtaacatag 41968900  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 27983866 - 27983763
Alignment:
Q  82 ttcattactccttcaattcctagatctctcctcgtccaccaactcg--taattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttag 179  Q
    ||||||||||||||||||  ||||||||| ||| |||||  ||||   |||||||||||||||| | |||||||||||||||||| ||||||||||||||    
T  27983866 ttcattactccttcaatttttagatctcttctcctccactcactctcttaattttggtgttgttgtataagtgtgtaacatagatgaaatgagattttag 27983767  T
Q  180 agag 183  Q
    ||||    
T  27983766 agag 27983763  T

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Target: scaffold0011 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 181
Target Start/End: Complemental strand, 229116 - 229015
Alignment:
Q  82 ttcattactccttcaattcctagatctctcctcgtccaccaactcg--taattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttag 179  Q
    |||||||||||||||||||| | |||||||||| | |||| ||||   |||||||||  ||||| |||||||||||||||||||| ||||||||||||||    
T  229116 ttcattactccttcaattcccatatctctcctccttcacccactctcttaattttggcattgttgtgtaagtgtgtaacatagatgaaatgagattttag 229017  T
Q  180 ag 181  Q
    ||    
T  229016 ag 229015  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 36033516 - 36033618
Alignment:
Q  82 ttcattactccttcaattcctagatctctcctcgtccaccaactcg--taattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttag 179  Q
    |||||| ||||||||||| | |||||||| ||| |||||  ||||   |||||||||||||||| ||||||||||||||||||| | |||||||||||||    
T  36033516 ttcattgctccttcaatttccagatctcttctcctccactcactctcttaattttggtgttgttgtgtaagtgtgtaacataga-tgaatgagattttag 36033614  T
Q  180 agag 183  Q
    ||||    
T  36033615 agag 36033618  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 1236006 - 1236061
Alignment:
Q  128 taattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttagagag 183  Q
    ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  1236006 taatttttgtgttgttatgtaagtgtgtaacatatataaaatgagattttagagag 1236061  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 7805813 - 7805758
Alignment:
Q  128 taattttggtgttgttatgtaagtgtgtaacatagattaaatgagattttagagag 183  Q
    |||||||||||||||| || |||||||| |||||||| ||||||||||||| ||||    
T  7805813 taattttggtgttgttgtgcaagtgtgtgacatagatgaaatgagattttaaagag 7805758  T

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