View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5610_low_6 (Length: 235)
Name: NF5610_low_6
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5610_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 15398276 - 15398057
Alignment:
| Q |
4 |
tattgctcaatgaagttgtgtttccatggttattcaatatgaaatctctcgattgttcggtttgcggttcacattgactgtattccgaatccgagcaacc |
103 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
15398276 |
tatttctcaatgaagttgtgtttccattgttattcaatatgaaatctctcgattgttcggtttgtggttcacatttactgtattccgaatccgagcaacc |
15398177 |
T |
|
| Q |
104 |
ttccatcattgactcgagtcgaacaaacatgaaaaggttgtcaaagagttttttctcgaaatcatcgtctttcttatgtaggtctttatatccataccgt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
15398176 |
ttccatcattgactcgagtcgaacaaacatgaaaaggttttctaatagttttttctctaaatcatcgtctttcttatgtaggtctttatatccttatcgt |
15398077 |
T |
|
| Q |
204 |
gccacacaacgaaaaatgtg |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15398076 |
gccacacaacgaaaaatgtg |
15398057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 4 - 223
Target Start/End: Complemental strand, 15389674 - 15389455
Alignment:
| Q |
4 |
tattgctcaatgaagttgtgtttccatggttattcaatatgaaatctctcgattgttcggtttgcggttcacattgactgtattccgaatccgagcaacc |
103 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15389674 |
tattactcaatgaagttgtgtttccattgttattcaacatgaaatctctcgactgttcggtttgcggttcacataaactgtattccgaatccgagcaacc |
15389575 |
T |
|
| Q |
104 |
ttccatcattgactcgagtcgaacaaacatgaaaaggttgtcaaagagttttttctcgaaatcatcgtctttcttatgtaggtctttatatccataccgt |
203 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
15389574 |
ttccatcatggactcgagccgaacaaacatgaaaaggttgtcgaatagtttcttctcaaaatcatcgtctttcttatgtaggtctttatatccgtatcgt |
15389475 |
T |
|
| Q |
204 |
gccacacaacgaaaaatgtg |
223 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15389474 |
gccacacaacgaaaaatgtg |
15389455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 99 - 223
Target Start/End: Original strand, 38665810 - 38665934
Alignment:
| Q |
99 |
caaccttccatcattgactcgagtcgaacaaacatgaaaaggttgtcaaagagttttttctcgaaatcatcgtctttcttatgtaggtctttatatccat |
198 |
Q |
| |
|
|||||||||||||| || || || |||||||| ||||||| ||||||||||||||||| || || ||||||||||| || |||||||| || |||| |
|
|
| T |
38665810 |
caaccttccatcatagattcaagcttaacaaacagtgaaaggttatcaaagagttttttctcaaactcttcgtctttcttgtgcaggtctttgtagccat |
38665909 |
T |
|
| Q |
199 |
accgtgccacacaacgaaaaatgtg |
223 |
Q |
| |
|
||||||||||||| ||||| ||||| |
|
|
| T |
38665910 |
accgtgccacacatcgaaagatgtg |
38665934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University