View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5610_low_7 (Length: 231)

Name: NF5610_low_7
Description: NF5610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5610_low_7
NF5610_low_7
[»] chr7 (2 HSPs)
chr7 (1-231)||(45518823-45519053)
chr7 (178-214)||(12875610-12875646)
[»] chr8 (3 HSPs)
chr8 (164-221)||(10428775-10428832)
chr8 (178-223)||(10431090-10431135)
chr8 (169-205)||(41390232-41390268)
[»] chr4 (5 HSPs)
chr4 (166-210)||(11708318-11708362)
chr4 (166-212)||(34558056-34558102)
chr4 (168-231)||(11677617-11677681)
chr4 (168-231)||(11685896-11685960)
chr4 (98-150)||(30551566-30551618)
[»] chr3 (3 HSPs)
chr3 (166-221)||(46290012-46290067)
chr3 (166-217)||(35212546-35212597)
chr3 (94-126)||(34573184-34573216)
[»] chr1 (1 HSPs)
chr1 (166-226)||(40499-40555)
[»] chr5 (1 HSPs)
chr5 (89-126)||(2622025-2622062)
[»] chr6 (1 HSPs)
chr6 (122-158)||(33981796-33981832)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 45519053 - 45518823
Alignment:
Q  1 gctgatgttgcaaataattttatggtaaattcactttcattccacttcttgagtaatgtcttagctatttgacagtgctatattatgttattgtcagaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45519053 gctgatgttgcaaataattttatggtaaattcactttcattccacttcttgagtaatgtcttagctatttgacagtgctatgttatgttattgtcagaat 45518954  T
Q  101 tagttgaataatgtttaaggtagttagttacaagttagttatgattagttagcttagtaatgatttcattctatcaatttcaaataatcaatctttctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45518953 tagttgaataatgtttaaggtagttagttacaagttagttatgattagttagcttagtaatgatttcattctatcaatttcaaataatcaatctttctct 45518854  T
Q  201 caatttatttttctctttgttgggctatacc 231  Q
    |||||||||||||||||||||||||||||||    
T  45518853 caatttatttttctctttgttgggctatacc 45518823  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 12875610 - 12875646
Alignment:
Q  178 tttcaaataatcaatctttctctcaatttatttttct 214  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  12875610 tttcagataatcaatatttctctcaatttatttttct 12875646  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 10428775 - 10428832
Alignment:
Q  164 tttcattctatcaatttcaaataatcaatctttctctcaatttatttttctctttgtt 221  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||    
T  10428775 tttcattttatcaatttcaaataataaatccttctctcaattaatttttctctttgtt 10428832  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 10431090 - 10431135
Alignment:
Q  178 tttcaaataatcaatctttctctcaatttatttttctctttgttgg 223  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  10431090 tttcaaataatcaatctttctctcaatttatttttctttttgttgg 10431135  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 41390268 - 41390232
Alignment:
Q  169 ttctatcaatttcaaataatcaatctttctctcaatt 205  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  41390268 ttctatcaatttcaaataatcaatcattctcttaatt 41390232  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 11708362 - 11708318
Alignment:
Q  166 tcattctatcaatttcaaataatcaatctttctctcaatttattt 210  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  11708362 tcattctatcaattccaaataatcaatctttctctcaatttattt 11708318  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 34558056 - 34558102
Alignment:
Q  166 tcattctatcaatttcaaataatcaatctttctctcaatttattttt 212  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||||    
T  34558056 tcattctatcaatttcaaataatcaatatttatctcaatttcttttt 34558102  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 11677681 - 11677617
Alignment:
Q  168 attctatcaa-tttcaaataatcaatctttctctcaatttatttttctctttgttgggctatacc 231  Q
    |||||||||| |||||||||||||||||||||  ||||||| |||| ||||||||| ||| ||||    
T  11677681 attctatcaaatttcaaataatcaatctttctgccaatttacttttttctttgttgagctttacc 11677617  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 11685960 - 11685896
Alignment:
Q  168 attctatcaa-tttcaaataatcaatctttctctcaatttatttttctctttgttgggctatacc 231  Q
    |||||||||| |||||||||||||||||||||  ||||||| |||| ||||||||| ||| ||||    
T  11685960 attctatcaaatttcaaataatcaatctttctgccaatttacttttttctttgttgagctttacc 11685896  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 30551618 - 30551566
Alignment:
Q  98 aattagttgaataatgtttaaggtagttagttacaagttagttatgattagtt 150  Q
    ||||| ||||||| ||||||||||||||||||| ||| | || ||||||||||    
T  30551618 aattatttgaatattgtttaaggtagttagttataaggtggtgatgattagtt 30551566  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 46290067 - 46290012
Alignment:
Q  166 tcattctatcaatttcaaataatcaatctttctctcaatttatttttctctttgtt 221  Q
    |||||| || |||| |||||||||||||||| |||||| |||||||||||||||||    
T  46290067 tcattccattaattccaaataatcaatctttatctcaaattatttttctctttgtt 46290012  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 35212546 - 35212597
Alignment:
Q  166 tcattctatcaatttcaaataatcaatctttctctcaatttatttttctctt 217  Q
    |||||||||||||| ||| |||||||| |||||||||| ||||||| |||||    
T  35212546 tcattctatcaattccaagtaatcaatatttctctcaaattattttcctctt 35212597  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 34573216 - 34573184
Alignment:
Q  94 tcagaattagttgaataatgtttaaggtagtta 126  Q
    ||||||||||||||||| |||||||||||||||    
T  34573216 tcagaattagttgaatattgtttaaggtagtta 34573184  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 40499 - 40555
Alignment:
Q  166 tcattctatcaatttcaaataatcaatctttctctcaatttatttttctctttgttgggct 226  Q
    |||||||||| ||| |||||||||||||||  ||||||||||||||  |||||||||||||    
T  40499 tcattctatctattccaaataatcaatctt--tctcaatttatttt--tctttgttgggct 40555  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 2622025 - 2622062
Alignment:
Q  89 tattgtcagaattagttgaataatgtttaaggtagtta 126  Q
    |||||| ||||||||||||||| |||||||||||||||    
T  2622025 tattgttagaattagttgaatattgtttaaggtagtta 2622062  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 158
Target Start/End: Complemental strand, 33981832 - 33981796
Alignment:
Q  122 agttagttacaagttagttatgattagttagcttagt 158  Q
    |||||||||||||||||||||||||| |||| |||||    
T  33981832 agttagttacaagttagttatgattatttagtttagt 33981796  T

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