View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5611_low_1 (Length: 567)
Name: NF5611_low_1
Description: NF5611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5611_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 553
Target Start/End: Complemental strand, 29814595 - 29814049
Alignment:
| Q |
10 |
aagaatatgttatgtggatggaggtggtggccggaacctgaggtggaggtggttgcgtgtttggatgaaaa-tgttgctaataagcttttagattagttt |
108 |
Q |
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| T |
29814595 |
aagaaaatgttatgtggatggaggtggtggccggaatttgagatggaggtggttgcgtgtttggatgaaaaatgttgctaataagcttttagattagttt |
29814496 |
T |
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| Q |
109 |
ttctcctttcaccggatttaaacacataaccttcaactctttatccttcaactcaaatcagttagctaccca-ctccccataagcttgaggtgagttgag |
207 |
Q |
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|||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
29814495 |
ttctcctttcaccgcatttaaatccataactttcaactctttatccctcaactcaaatcagttagctatccaactcctcataagcttgaggtgagttgag |
29814396 |
T |
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| Q |
208 |
aggttaaaatgatatgtaccttgagaggttgtgaagggacattatatatagacgtcgaggaagccattgtgt-ttaaaggggagccgttacaacgacgtt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
29814395 |
aggttaaaatgatatgtaccttgagaggttgtgaagggtcattatatatagacgtcgaggaagccattgtgtattaaatgggagccgttacaacgacgtt |
29814296 |
T |
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| Q |
307 |
catgaatgtcgtcaccggtagcttataagccgtcgatccattatgtgtcggagaagatctgaggtttgaaagaaggttatgtcggtttggtctctcactt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29814295 |
catgaatgtcgtcaccggtagcttataagccgtcgatccattatgtgtcggagaagatctgaggtttgaaagaaggttatgtcggtttggtctctcactt |
29814196 |
T |
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| Q |
407 |
gggtaattttgtttaactatacttgtggaagaaatcacgttgtacatgagaaaaataagatttgtactcaggggagcaaaatccgcaaactgtcttgtaa |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29814195 |
gggtaattttgtttaactatacttgtggaagaaatcacgttgtacatgagaaaaataagatttgtactcaggggagcaaaatccgcaaactgtcttgtaa |
29814096 |
T |
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| Q |
507 |
cataactatcgttggtgaggagatgtagatgaaacaacggataattt |
553 |
Q |
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| T |
29814095 |
cataactatcgttggtggggagatgtagatgaaacaaaggataattt |
29814049 |
T |
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