View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5611_low_2 (Length: 422)
Name: NF5611_low_2
Description: NF5611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5611_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 47185865 - 47186141
Alignment:
| Q |
16 |
tgtacaaatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtg |
115 |
Q |
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| T |
47185865 |
tgtacaaatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtg |
47185964 |
T |
|
| Q |
116 |
gtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185965 |
gtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcag |
47186064 |
T |
|
| Q |
216 |
ctggacaaagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgc |
292 |
Q |
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| T |
47186065 |
ctggacaaagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctttcttgtccatgttgtgc |
47186141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 47198408 - 47198696
Alignment:
| Q |
20 |
caaatgtttgtgtcgcaagttgtaatcggcgtagtgcttgggatgaaagtcacagatcactcagatagcttaagcaaaggctatgcaatgttggtggtgg |
119 |
Q |
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| T |
47198408 |
caaatgtttgtgtcccaagttgtaattggcatagtgcttggggctaaactccaagatcactcagatagcttaagcaaaggctatgcaatgttggtggtgg |
47198507 |
T |
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| Q |
120 |
ttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctgg |
219 |
Q |
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| T |
47198508 |
ttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctgg |
47198607 |
T |
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| Q |
220 |
acaaagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgcttatttaagtttggga |
308 |
Q |
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| T |
47198608 |
acaaagtgtgactgtgtttacaaacatgttgttcacttttcttattgctcaagctttcttgtccctgttgtgcttatttaagtttggga |
47198696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 47198753 - 47198810
Alignment:
| Q |
365 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaac |
422 |
Q |
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| T |
47198753 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaac |
47198810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 365 - 422
Target Start/End: Original strand, 47186214 - 47186271
Alignment:
| Q |
365 |
attccagagacaaagaatatacctattgaagatatggctgagacagtgtggaaacaac |
422 |
Q |
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| T |
47186214 |
attccagagacaaagaatatacccattgaagatatggctgagaaagtatggaaacaac |
47186271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 47212623 - 47212705
Alignment:
| Q |
146 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
228 |
Q |
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| T |
47212623 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
47212705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 276
Target Start/End: Complemental strand, 748668 - 748538
Alignment:
| Q |
146 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgtgactgtgtttacaaaca |
245 |
Q |
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||||| ||||| |||||||| || |||||| | ||||| |||||||||||||| | |||||| ||||||||||||||||||| || || | | |||| |
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| T |
748668 |
tttgcttggtcttggggtcctctcggttggcttattccaagtgagacatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaaca |
748569 |
T |
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| Q |
246 |
tgttgttcacttttcttattgctcaagcttt |
276 |
Q |
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|||||||||| ||| | |||||||| ||||| |
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| T |
748568 |
tgttgttcacctttgtcattgctcaggcttt |
748538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 41414153 - 41414049
Alignment:
| Q |
94 |
caaaggctatgcaatgttggtggtggttatggtatgcacatttgttgcatcttttgcatggtcatggggtccacttggttggttaattcctagtgagaca |
193 |
Q |
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|||||||||| |||| ||||| || ||| |||| ||| |||||||| | | || | ||||||||||||||| ||||||||| |||||| ||||||| | |
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| T |
41414153 |
caaaggctattcaatattggttgtagttgtggtttgcctatttgttgtagcgttcggatggtcatggggtcctcttggttggacaattccaagtgagata |
41414054 |
T |
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| Q |
194 |
tttcc |
198 |
Q |
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||||| |
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| T |
41414053 |
tttcc |
41414049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 1356817 - 1356896
Alignment:
| Q |
146 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaag |
225 |
Q |
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|||| |||||| ||||||||||| ||||||||| | || ||||||| ||||| ||||||| |||||||||||||||||| |
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| T |
1356817 |
tttggatggtcgtggggtccactaggttggttagtaccaagtgagatttttccattggagattagatcagctggacaaag |
1356896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 36202702 - 36202747
Alignment:
| Q |
146 |
tttgcatggtcatggggtccacttggttggttaattcctagtgaga |
191 |
Q |
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| T |
36202702 |
tttgcttggtcatggggtcctcttggttggttggttcctagtgaga |
36202747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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