View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5611_low_3 (Length: 378)

Name: NF5611_low_3
Description: NF5611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5611_low_3
NF5611_low_3
[»] scaffold0370 (1 HSPs)
scaffold0370 (139-362)||(13779-14013)
[»] chr2 (12 HSPs)
chr2 (137-229)||(38638830-38638921)
chr2 (137-229)||(38634705-38634796)
chr2 (94-135)||(755724-755765)
chr2 (94-135)||(4026987-4027028)
chr2 (94-135)||(12683589-12683630)
chr2 (94-139)||(36501494-36501539)
chr2 (94-132)||(33321298-33321336)
chr2 (94-135)||(4090551-4090592)
chr2 (94-135)||(29774807-29774848)
chr2 (94-135)||(38216081-38216122)
chr2 (94-135)||(38471774-38471815)
chr2 (95-135)||(23956247-23956287)
[»] chr5 (13 HSPs)
chr5 (94-135)||(35536907-35536948)
chr5 (94-135)||(41419563-41419604)
chr5 (94-134)||(28625542-28625582)
chr5 (89-133)||(5559904-5559948)
chr5 (94-125)||(41534685-41534716)
chr5 (94-124)||(42706860-42706890)
chr5 (94-135)||(11912085-11912126)
chr5 (94-135)||(12467327-12467368)
chr5 (94-135)||(13060585-13060626)
chr5 (94-135)||(17657304-17657345)
chr5 (94-134)||(1868908-1868948)
chr5 (95-135)||(6150855-6150895)
chr5 (94-126)||(28357203-28357235)
[»] chr4 (14 HSPs)
chr4 (94-135)||(48591407-48591448)
chr4 (94-135)||(15184608-15184649)
chr4 (94-135)||(52274103-52274144)
chr4 (94-133)||(22273842-22273881)
chr4 (94-132)||(4603318-4603356)
chr4 (94-135)||(17222891-17222932)
chr4 (94-135)||(18630878-18630919)
chr4 (94-135)||(23335704-23335745)
chr4 (94-135)||(29877701-29877742)
chr4 (94-135)||(36255019-36255060)
chr4 (94-135)||(46704253-46704294)
chr4 (94-130)||(10046294-10046330)
chr4 (95-135)||(11256644-11256684)
chr4 (94-126)||(35405746-35405778)
[»] chr3 (16 HSPs)
chr3 (94-135)||(43079917-43079958)
chr3 (94-133)||(29270423-29270462)
chr3 (94-135)||(29830622-29830663)
chr3 (94-135)||(52021309-52021350)
chr3 (96-135)||(42956162-42956201)
chr3 (94-132)||(29614255-29614293)
chr3 (94-132)||(40240563-40240601)
chr3 (94-135)||(20685847-20685888)
chr3 (94-135)||(28741197-28741238)
chr3 (94-135)||(29830741-29830782)
chr3 (94-135)||(40581059-40581100)
chr3 (94-135)||(48597850-48597891)
chr3 (94-135)||(53218023-53218064)
chr3 (94-126)||(585082-585114)
chr3 (94-126)||(22809185-22809217)
chr3 (95-135)||(38631056-38631095)
[»] chr7 (9 HSPs)
chr7 (137-212)||(40766697-40766772)
chr7 (94-135)||(29378707-29378748)
chr7 (94-135)||(46744015-46744056)
chr7 (94-138)||(37779262-37779306)
chr7 (94-135)||(34922995-34923036)
chr7 (94-135)||(47654397-47654438)
chr7 (94-134)||(6406856-6406896)
chr7 (94-126)||(22575648-22575680)
chr7 (94-122)||(47511105-47511133)
[»] chr8 (7 HSPs)
chr8 (94-135)||(10298909-10298950)
chr8 (94-135)||(16972339-16972380)
chr8 (94-135)||(24866934-24866975)
chr8 (95-135)||(34286547-34286587)
chr8 (97-126)||(9131120-9131149)
chr8 (94-135)||(10213757-10213798)
chr8 (95-135)||(25333715-25333755)
[»] chr1 (14 HSPs)
chr1 (94-135)||(15515330-15515371)
chr1 (94-135)||(35590192-35590233)
chr1 (94-135)||(37329395-37329436)
chr1 (94-135)||(45267528-45267569)
chr1 (94-133)||(16888951-16888990)
chr1 (94-133)||(49971313-49971352)
chr1 (94-132)||(41196696-41196734)
chr1 (94-135)||(3069837-3069878)
chr1 (94-135)||(4068177-4068218)
chr1 (94-135)||(6337739-6337780)
chr1 (94-135)||(48819361-48819402)
chr1 (94-126)||(19284960-19284992)
chr1 (94-126)||(26988210-26988242)
chr1 (94-126)||(50919549-50919581)
[»] chr6 (3 HSPs)
chr6 (94-132)||(3210982-3211020)
chr6 (94-132)||(32165247-32165285)
chr6 (94-134)||(2255796-2255836)
[»] scaffold0004 (1 HSPs)
scaffold0004 (94-126)||(227769-227801)


Alignment Details
Target: scaffold0370 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 139 - 362
Target Start/End: Original strand, 13779 - 14013
Alignment:
Q  139 gttagaatggaacaataatacggctttcccagaagattatgagtagaaggttctgcattcattagagagacgacaaactaagtggagatg---------- 228  Q
    |||||||||||||| || || |||||||| ||||||||||||| ||||| |||| || |||||||||||||||| |||||||||||||||              
T  13779 gttagaatggaacagtagtaaggctttccgagaagattatgagaagaagattctacaatcattagagagacgac-aactaagtggagatgggagaagaag 13877  T
Q  229 ----gacaaatcatgtagtattatgcatttgtgatggtgggagcaaaaagttggaagattattaactgtacatgttattctgttaaaattataagcaacg 324  Q
        || ||||| || |||| ||||||| ||| ||||||||||  ||| |||| || |||  ||| |||||||||||||||| | ||||  ||||||||     
T  13878 acctgataaatcttgcagtactatgcatctgtaatggtgggag-gaaatgttgaaatatt-gtaagtgtacatgttattctgctgaaatagtaagcaaca 13975  T
Q  325 atacattaacaaaatttgcatacatgaaaccatgttgt 362  Q
     |||||||||||||||||||||||||||||||||||||    
T  13976 gtacattaacaaaatttgcatacatgaaaccatgttgt 14013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 38638830 - 38638921
Alignment:
Q  137 atgttagaatggaacaataatacggctttcccagaagattatgagtagaaggttctgcattcattagagagacgacaaactaagtggagatgg 229  Q
    |||||| ||||||| ||||||| |||||||  ||||||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||    
T  38638830 atgttaaaatggaataataataaggctttcagagaagattatgagaagaaggttctacaatcattagagagacga-gaactaagtggagatgg 38638921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 229
Target Start/End: Original strand, 38634705 - 38634796
Alignment:
Q  137 atgttagaatggaacaataatacggctttcccagaagattatgagtagaaggttctgcattcattagagagacgacaaactaagtggagatgg 229  Q
    ||||||||||||||||| |||| | |||||| ||||||||||||| | ||||||| ||| |||||||||||||| | |||||||| |||||||    
T  38634705 atgttagaatggaacaacaataagactttccgagaagattatgagaaaaaggttcggcaatcattagagagacggc-aactaagtagagatgg 38634796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 755765 - 755724
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  755765 aaaaaacagcttatgaagatacaatttttgttagtgagaact 755724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 4026987 - 4027028
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  4026987 aaaaaacagcttatgaagatacaatttttgttagtgagaact 4027028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 12683630 - 12683589
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  12683630 aaaaaacagcttatgaagatacaattttggttactgagaact 12683589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 36501539 - 36501494
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaactcatg 139  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  36501539 aaaaaacagcttatgaagataaaatttgcgttagtgagaactcatg 36501494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 33321336 - 33321298
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  33321336 aaaaaacagcttatgaagatacaatttttgttagtgaga 33321298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 4090551 - 4090592
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||| |||||||||||||||||||  |||||||    
T  4090551 aaaaaacagcttacgaagatacaattttcgttaccgagaact 4090592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 29774807 - 29774848
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||    
T  29774807 aaaaaacggcttatgaaaatacaattttcgttagtgagaact 29774848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 38216081 - 38216122
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||| ||| |||||||||||||||||||||| ||||||||    
T  38216081 aaaaaatagcatatgaagatacaattttcgttagtgagaact 38216122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 38471815 - 38471774
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  38471815 aaaaaacagtttatgaaggtacaattttcgttagtgagaact 38471774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 23956287 - 23956247
Alignment:
Q  95 aaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||| |||| |||||||||||||||||| ||||||||    
T  23956287 aaaaacagtttataaagatacaattttcgttaatgagaact 23956247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 35536907 - 35536948
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  35536907 aaaaaacagcttatgaagatacaattttcgttactgagaact 35536948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 41419563 - 41419604
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  41419563 aaaaaacagcttatgaagatacaattttcgttagtgagaact 41419604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 28625542 - 28625582
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaac 134  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  28625542 aaaaaacagcttatgaagatacaattttcgttagtgagaac 28625582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 5559948 - 5559904
Alignment:
Q  89 tgaataaaaaacagcttatgaagatacaattttcgttattgagaa 133  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||    
T  5559948 tgaaaaaaaagcagcttatgaagatacaattttcgttagtgagaa 5559904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 125
Target Start/End: Original strand, 41534685 - 41534716
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtt 125  Q
    ||||||||||||||||||||||||||||||||    
T  41534685 aaaaaacagcttatgaagatacaattttcgtt 41534716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 42706860 - 42706890
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgt 124  Q
    |||||||||||||||||||||||||||||||    
T  42706860 aaaaaacagcttatgaagatacaattttcgt 42706890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 11912126 - 11912085
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||| ||||||||||||||||||||| |||| ||||||||    
T  11912126 aaaaaagagcttatgaagatacaatttttgttagtgagaact 11912085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 12467327 - 12467368
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||| |||||||| |||| ||||||||    
T  12467327 aaaaaacagcttatgaagagacaatttttgttagtgagaact 12467368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 13060626 - 13060585
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||| ||| |||||||||| ||||||||    
T  13060626 aaaaaacagcttatgaagttaccattttcgttagtgagaact 13060585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 17657304 - 17657345
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||| ||||||||||||| |||||||||| ||||||||    
T  17657304 aaaaaacatcttatgaagatacgattttcgttagtgagaact 17657345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 1868908 - 1868948
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaac 134  Q
    ||||| || |||||||||||||||||||||||| |||||||    
T  1868908 aaaaatcaacttatgaagatacaattttcgttagtgagaac 1868948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 6150855 - 6150895
Alignment:
Q  95 aaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||| |||||||||| |||| ||||||||    
T  6150855 aaaaacagcttatgaatatacaatttttgttactgagaact 6150895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 28357203 - 28357235
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||| |||||||||||||||||||||||    
T  28357203 aaaaaacaggttatgaagatacaattttcgtta 28357235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 48591448 - 48591407
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  48591448 aaaaaacagcttatgaagatacaattttcgttaatgagaact 48591407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 15184608 - 15184649
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  15184608 aaaaaacagtttatgaagatacaattttcgttagtgagaact 15184649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 52274144 - 52274103
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  52274144 aaaaaacagcttatgaagatacaattttcgtcagtgagaact 52274103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 22273842 - 22273881
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaa 133  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  22273842 aaaaaacagcttatgaagatacaatttttgttagtgagaa 22273881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 4603356 - 4603318
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  4603356 aaaaaacagtttatgaagatacaattttcgttagtgaga 4603318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 17222891 - 17222932
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| ||||||||||||||||||||||| | ||||||    
T  17222891 aaaaaacagattatgaagatacaattttcgttagttagaact 17222932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 18630919 - 18630878
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||| | ||||||||| ||||||||    
T  18630919 aaaaaacagcttatgaagataaagttttcgttagtgagaact 18630878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 23335704 - 23335745
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||| | | ||||||||    
T  23335704 aaaaaacagcttatgaagatacaattttcataagtgagaact 23335745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 29877701 - 29877742
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||| |||||||||||||||||||||| |||| ||||||||    
T  29877701 aaaaagcagcttatgaagatacaatttttgttagtgagaact 29877742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 36255060 - 36255019
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||  ||| ||||||||    
T  36255060 aaaaaacagcttatgaagatacaattttaattagtgagaact 36255019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 46704294 - 46704253
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||    
T  46704294 aaaaaacagcttatgaagataaaattttcattagtgagaact 46704253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 10046294 - 10046330
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattga 130  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  10046294 aaaaaacaggttatgaaaatacaattttcgttattga 10046330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 11256684 - 11256644
Alignment:
Q  95 aaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||| ||||  |||||||    
T  11256684 aaaaacagcttatgaagatacaattttagttagcgagaact 11256644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 35405746 - 35405778
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||||||||||||||| |||||||||||    
T  35405746 aaaaaacagcttatgaagatagaattttcgtta 35405778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 43079958 - 43079917
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  43079958 aaaaaacagcttatgaagatacaattttcgtgattgagaact 43079917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 29270423 - 29270462
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaa 133  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  29270423 aaaaaacagcttatgaagatacaattttcgttaatgagaa 29270462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 29830663 - 29830622
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  29830663 aaaaaacagtttatgaagatacaattttcgttagtgagaact 29830622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 52021309 - 52021350
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  52021309 aaaaaacagcttatgaagatataattttcgttagtgagaact 52021350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 42956201 - 42956162
Alignment:
Q  96 aaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  42956201 aaaacagcttataaagatacaattttcgttagtgagaact 42956162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Original strand, 29614255 - 29614293
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  29614255 aaaaaacagtttatgaagatacaattttcgttagtgaga 29614293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 40240601 - 40240563
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  40240601 aaaaaacaacttatgaagatacaattttcgttagtgaga 40240563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 20685847 - 20685888
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||| |||||||||||||||||||| ||| ||||||||    
T  20685847 aaaaaacaacttatgaagatacaattttcattagtgagaact 20685888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 28741238 - 28741197
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  28741238 aaaaaacagattatgaaggtacaattttcgttagtgagaact 28741197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 29830782 - 29830741
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| |||||||||||||||||| |||| ||||||||    
T  29830782 aaaaaacagtttatgaagatacaatttttgttactgagaact 29830741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 40581100 - 40581059
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||| |||||||| ||||||||||||| ||||||||    
T  40581100 aaaaaacagcgtatgaagaaacaattttcgttagtgagaact 40581059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 48597891 - 48597850
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||| |||||||||||||||||||||| | ||||||||    
T  48597891 aaaaaacaacttatgaagatacaattttcgtcagtgagaact 48597850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 53218064 - 53218023
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||| ||| |||||||||||||||||||| ||||||||    
T  53218064 aaaaaacaacttttgaagatacaattttcgttagtgagaact 53218023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 585082 - 585114
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    |||||||| ||||||||||||||||||||||||    
T  585082 aaaaaacaacttatgaagatacaattttcgtta 585114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 22809217 - 22809185
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||| |||||||||||||||||||||||||    
T  22809217 aaaaaactgcttatgaagatacaattttcgtta 22809185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 38631056 - 38631095
Alignment:
Q  95 aaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||| |||||||||| |||||||||||||    
T  38631056 aaaaacagcttatgaa-atacaattttggttattgagaact 38631095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 40766772 - 40766697
Alignment:
Q  137 atgttagaatggaacaataatacggctttcccagaagattatgagtagaaggttctgcattcattagagagacgac 212  Q
    |||||||||||||||||||||| ||||||   | ||||||||||| |||| ||| |||||||||  ||||||||||    
T  40766772 atgttagaatggaacaataataaggctttttgaaaagattatgagaagaatgttgtgcattcatccgagagacgac 40766697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 29378707 - 29378748
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  29378707 aaaaaacagcttatgaagatacaattttcgttagtaagaact 29378748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 46744015 - 46744056
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  46744015 aaaaaacagcatatgaagatacaattttcgttagtgagaact 46744056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 37779306 - 37779262
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaactcat 138  Q
    ||||||||||||||||| |||||| |||||||| |||||||||||    
T  37779306 aaaaaacagcttatgaaaatacaactttcgttagtgagaactcat 37779262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 34922995 - 34923036
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||| |||||||||| ||||||||| ||||||||    
T  34922995 aaaaaacagcttgtgaagatacacttttcgttagtgagaact 34923036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 47654438 - 47654397
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  47654438 aaaaaacagtttatgaaggtacaattttcgttagtgagaact 47654397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 6406896 - 6406856
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaac 134  Q
    |||||||||||||||||||| ||||||||| || |||||||    
T  6406896 aaaaaacagcttatgaagatgcaattttcgctaatgagaac 6406856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 22575648 - 22575680
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||| |||||||||||||||||||||||    
T  22575648 aaaaaacagtttatgaagatacaattttcgtta 22575680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 47511105 - 47511133
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttc 122  Q
    |||||||||||||||||||||||||||||    
T  47511105 aaaaaacagcttatgaagatacaattttc 47511133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 10298950 - 10298909
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||||||||||||| |||| ||||||||    
T  10298950 aaaaaacagcttatgaagatacaatttttgttaatgagaact 10298909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 16972380 - 16972339
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||| ||| ||||    
T  16972380 aaaaaacagcttatgaagatacaattttcgttagtgataact 16972339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 24866975 - 24866934
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  24866975 aaaaaacagcttatgaaggtacaattttcgttatcgagaact 24866934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 34286587 - 34286547
Alignment:
Q  95 aaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  34286587 aaaaacagcttatgaagatacaattttcgttagggagaact 34286547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 126
Target Start/End: Complemental strand, 9131149 - 9131120
Alignment:
Q  97 aaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||||||||||||||||||||||||    
T  9131149 aaacagcttatgaagatacaattttcgtta 9131120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 10213757 - 10213798
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||| |||||||| |||| ||||||||    
T  10213757 aaaaaacagcttatgaagaaacaatttttgttagtgagaact 10213798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Complemental strand, 25333755 - 25333715
Alignment:
Q  95 aaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||| |||||||||||||||||||||||| ||| ||||    
T  25333755 aaaaacaacttatgaagatacaattttcgttagtgaaaact 25333715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 15515371 - 15515330
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  15515371 aaaaaagagcttatgaagatacaattttcgttagtgagaact 15515330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 35590192 - 35590233
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  35590192 aaaaaacagcttatgaagatacaattttcgtcagtgagaact 35590233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 37329436 - 37329395
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  37329436 aaaaaacagcttatgaagatacaattttcgttggtgagaact 37329395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 45267528 - 45267569
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  45267528 aaaaaacagcttatgaagatacaattttcgttagtaagaact 45267569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 16888990 - 16888951
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaa 133  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  16888990 aaaaaacagcttatgaagatacaattttcattagtgagaa 16888951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 49971313 - 49971352
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaa 133  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  49971313 aaaaaacagcttacgaagatacaattttcgttagtgagaa 49971352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 41196734 - 41196696
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  41196734 aaaaaacagcttatgaagatacaatttttgttagtgaga 41196696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 3069878 - 3069837
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||||||||||||||  || ||||||||    
T  3069878 aaaaaacagcttatgaagatacaattttcactagtgagaact 3069837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 4068177 - 4068218
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||| ||||||||||||| |||||||||| ||||||||    
T  4068177 aaaaaacaacttatgaagatactattttcgttagtgagaact 4068218  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 6337780 - 6337739
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    |||||||||||||||||||||||||||| ||||  |||||||    
T  6337780 aaaaaacagcttatgaagatacaatttttgttagcgagaact 6337739  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Original strand, 48819361 - 48819402
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaact 135  Q
    ||||||||||||||||||||||| |||| |||| ||||||||    
T  48819361 aaaaaacagcttatgaagatacattttttgttagtgagaact 48819402  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 19284960 - 19284992
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||| |||||||||||||||||||||||    
T  19284960 aaaaaacagtttatgaagatacaattttcgtta 19284992  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 26988210 - 26988242
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    |||||||||||||||||||||||||| ||||||    
T  26988210 aaaaaacagcttatgaagatacaattgtcgtta 26988242  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 50919549 - 50919581
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||| |||||||||||||||||||||||    
T  50919549 aaaaaacaggttatgaagatacaattttcgtta 50919581  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 3211020 - 3210982
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  3211020 aaaaaacagcttatgaagatacaattttcattaatgaga 3210982  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 32165285 - 32165247
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgaga 132  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  32165285 aaaaaacagtttatgaagatacaattttcgttagtgaga 32165247  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 2255796 - 2255836
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgttattgagaac 134  Q
    |||||||||||||||||||||||||||| | || |||||||    
T  2255796 aaaaaacagcttatgaagatacaatttttggtagtgagaac 2255836  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 227769 - 227801
Alignment:
Q  94 aaaaaacagcttatgaagatacaattttcgtta 126  Q
    ||||||||||||||||| |||||||||||||||    
T  227769 aaaaaacagcttatgaatatacaattttcgtta 227801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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