View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5611_low_5 (Length: 365)

Name: NF5611_low_5
Description: NF5611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5611_low_5
NF5611_low_5
[»] chr7 (3 HSPs)
chr7 (17-205)||(20072921-20073107)
chr7 (213-334)||(9237854-9237975)
chr7 (94-171)||(20083675-20083753)
[»] chr3 (3 HSPs)
chr3 (211-334)||(13852357-13852480)
chr3 (214-323)||(1658851-1658960)
chr3 (224-334)||(4848255-4848365)
[»] chr6 (5 HSPs)
chr6 (214-334)||(11946575-11946695)
chr6 (214-334)||(14666536-14666658)
chr6 (214-334)||(14323140-14323252)
chr6 (214-334)||(14416150-14416262)
chr6 (214-334)||(17715509-17715621)
[»] chr8 (2 HSPs)
chr8 (213-334)||(28244495-28244616)
chr8 (249-311)||(17629681-17629743)
[»] scaffold0838 (1 HSPs)
scaffold0838 (214-334)||(183-303)
[»] scaffold0832 (1 HSPs)
scaffold0832 (214-334)||(214-334)
[»] chr5 (2 HSPs)
chr5 (214-263)||(31406126-31406175)
chr5 (287-334)||(24047204-24047251)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 20073107 - 20072921
Alignment:
Q  17 aagcctttggacatcgaagccgtatttattgtaaacctatgnnnnnnnnnatgaaaataaattataatcttaatgacaaaaacaataaacatgatacaca 116  Q
    ||||||||||||||| |||||||||||| ||||||||||||         | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20073107 aagcctttggacatcaaagccgtatttagtgtaaacctatgttttttt--aggaaaagaaattataatcttaatgacaaaaacaataaacatgatacaca 20073010  T
Q  117 cattggtggtaactttcgtattcattctaaagtttgcaatttgcagagttcataaatgagtttctaaaattattatgctgtaaagtttg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20073009 cattggtggtaactttcgtattcattctaaagtttgcaatttgcagagttcataaatgagtttctaaaattattatgctgtaaagtttg 20072921  T

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Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 9237854 - 9237975
Alignment:
Q  213 tcactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttac 312  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9237854 tcactactacaataataacttttagtaagaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttac 9237953  T
Q  313 atacaatacaacaagtaccatc 334  Q
    || |||||||||||||||||||    
T  9237954 atccaatacaacaagtaccatc 9237975  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 20083753 - 20083675
Alignment:
Q  94 aaaaacaataaacatgatacacacattggtggtaactttcgtattcattctaaag-tttgcaatttgcagagttcataa 171  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||| || |||||||||||    
T  20083753 aaaaacaataaacatgatacacacattcgtggcaacttttgtattcattctaaagttttgcaatctgtagagttcataa 20083675  T

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Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 211 - 334
Target Start/End: Complemental strand, 13852480 - 13852357
Alignment:
Q  211 tgtcactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgtt 310  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13852480 tgtcactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgtt 13852381  T
Q  311 acatacaatacaacaagtaccatc 334  Q
    |||| |||||||||||||||||||    
T  13852380 acatccaatacaacaagtaccatc 13852357  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 1658960 - 1658851
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  1658960 cactactacaataatgacttttagtaacatggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttaca 1658861  T
Q  314 tacaatacaa 323  Q
    | || |||||    
T  1658860 tccactacaa 1658851  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 4848255 - 4848365
Alignment:
Q  224 ataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttacatacaatacaa 323  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||    
T  4848255 ataataacatttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttagatccaatacaa 4848354  T
Q  324 caagtaccatc 334  Q
    |||||||||||    
T  4848355 caagtaccatc 4848365  T

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Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 11946575 - 11946695
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  11946575 cactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttaca 11946674  T
Q  314 tacaatacaacaagtaccatc 334  Q
    | |||||||||||||||||||    
T  11946675 tccaatacaacaagtaccatc 11946695  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 14666536 - 14666658
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattg--atatagtaacaattgagtaaaagtgtta 311  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||    
T  14666536 cactactacaataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagctgatataatgatatatagtaacaattgagtaaaagtgtta 14666635  T
Q  312 catacaatacaacaagtaccatc 334  Q
     || |||||||||||||||||||    
T  14666636 gatccaatacaacaagtaccatc 14666658  T

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Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 14323252 - 14323140
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  14323252 cactactacaataatgacttttagcaacaacgtgattgcaacacttgaaaaattgttag--------ctgatatagtaacaattgagtaaaagtgttaca 14323161  T
Q  314 tacaatacaacaagtaccatc 334  Q
    | |||||||||||||||||||    
T  14323160 tccaatacaacaagtaccatc 14323140  T

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Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 14416262 - 14416150
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  14416262 cactactacaataatgacttttagcaacaacgtgattgcaacacttgaaaaattgttag--------ctgatatagtaacaattgagtaaaagtgttaca 14416171  T
Q  314 tacaatacaacaagtaccatc 334  Q
    | |||||||||||||||||||    
T  14416170 tccaatacaacaagtaccatc 14416150  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 214 - 334
Target Start/End: Original strand, 17715509 - 17715621
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    |||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||        | |||||||||||||||||||||||||||||| |    
T  17715509 cactactacaataatgacatttagtaataaggtgattgcaacacttgaaaaattgtta--------actgatatagtaacaattgagtaaaagtgttaga 17715600  T
Q  314 tacaatacaacaagtaccatc 334  Q
    | |||||||||||||| ||||    
T  17715601 tccaatacaacaagtatcatc 17715621  T

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Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 28244495 - 28244616
Alignment:
Q  213 tcactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttac 312  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  28244495 tcactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtaatatagtaacaattgagtaaaagtgttac 28244594  T
Q  313 atacaatacaacaagtaccatc 334  Q
    || |||||||||||||||||||    
T  28244595 atccaatacaacaagtaccatc 28244616  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 17629681 - 17629743
Alignment:
Q  249 ttgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgtta 311  Q
    ||||||||||||| |||||||||| ||||| | ||||||||||| ||||||||||||||||||    
T  17629681 ttgtaacacttgagaaattgttagctgatacagtgatatagtaagaattgagtaaaagtgtta 17629743  T

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Target: scaffold0838 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 303 - 183
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    ||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  303 cactattacaataataacttttagtaacaaggtgattgcaacatttgaaaaattgttagctgatataatgatatagtaacaattgagtaaaagtgttaca 204  T
Q  314 tacaatacaacaagtaccatc 334  Q
    | |||||||||||||||||||    
T  203 tccaatacaacaagtaccatc 183  T

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Target: scaffold0832 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 334
Target Start/End: Complemental strand, 334 - 214
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaaaattgttagatgatatattgatatagtaacaattgagtaaaagtgttaca 313  Q
    ||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  334 cactattacaataataacttttagtaacaaggtgattgcaacatttgaaaaattgttagctgatataatgatatagtaacaattgagtaaaagtgttaca 235  T
Q  314 tacaatacaacaagtaccatc 334  Q
    | |||||||||||||||||||    
T  234 tccaatacaacaagtaccatc 214  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 31406126 - 31406175
Alignment:
Q  214 cactactacaataatgacttttagtaacaaggtgattgtaacacttgaaa 263  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  31406126 cactactacaataatgacatttagtaacaaggtgattgcaacacttgaaa 31406175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 24047251 - 24047204
Alignment:
Q  287 tagtaacaattgagtaaaagtgttacatacaatacaacaagtaccatc 334  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||||    
T  24047251 tagtaacaattgagtaaaagtgttagatccgatacagcaagtaccatc 24047204  T

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