View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5612-Insertion-2 (Length: 1095)

Name: NF5612-Insertion-2
Description: NF5612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5612-Insertion-2
NF5612-Insertion-2
[»] chr1 (10 HSPs)
chr1 (432-1092)||(37027957-37028599)
chr1 (12-59)||(37028644-37028691)
chr1 (8-59)||(36384315-36384366)
chr1 (432-479)||(41677727-41677774)
chr1 (8-58)||(47459112-47459161)
chr1 (8-57)||(41677820-41677869)
chr1 (432-476)||(43824194-43824238)
chr1 (432-479)||(19563352-19563399)
chr1 (10-57)||(43824285-43824332)
chr1 (8-58)||(19563442-19563492)
[»] scaffold0082 (1 HSPs)
scaffold0082 (102-385)||(55852-56135)
[»] scaffold0024 (1 HSPs)
scaffold0024 (103-378)||(54983-55258)
[»] chr7 (5 HSPs)
chr7 (385-434)||(6943663-6943712)
chr7 (385-434)||(9935659-9935708)
chr7 (8-59)||(24879076-24879127)
chr7 (385-434)||(5598367-5598416)
chr7 (427-477)||(24879166-24879216)
[»] chr4 (3 HSPs)
chr4 (385-434)||(18303376-18303425)
chr4 (385-434)||(18031896-18031945)
chr4 (8-55)||(50470094-50470141)
[»] chr3 (6 HSPs)
chr3 (385-434)||(13235543-13235592)
chr3 (8-59)||(2663311-2663362)
chr3 (8-59)||(3984519-3984570)
chr3 (8-59)||(49323173-49323224)
chr3 (9-59)||(35637215-35637265)
chr3 (432-477)||(28212599-28212644)
[»] chr2 (5 HSPs)
chr2 (385-434)||(11936555-11936604)
chr2 (385-434)||(37874530-37874579)
chr2 (8-59)||(18058858-18058909)
chr2 (432-477)||(39822986-39823031)
chr2 (6-58)||(5737282-5737334)
[»] chr8 (9 HSPs)
chr8 (329-385)||(34289681-34289737)
chr8 (8-58)||(36676334-36676384)
chr8 (8-59)||(29525863-29525914)
chr8 (9-59)||(9305229-9305279)
chr8 (7-59)||(35163075-35163127)
chr8 (432-482)||(30233892-30233942)
chr8 (8-57)||(27768888-27768937)
chr8 (6-55)||(41774935-41774984)
chr8 (389-434)||(42913857-42913902)
[»] chr5 (5 HSPs)
chr5 (10-59)||(24147135-24147184)
chr5 (8-59)||(2134747-2134798)
chr5 (8-59)||(20256985-20257036)
chr5 (8-59)||(43146342-43146393)
chr5 (432-478)||(38089067-38089113)


Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 432 - 1092
Target Start/End: Complemental strand, 37028599 - 37027957
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctcataatttaatttaattttccaaaattaaggatgagtttgtttaaagataatttt 531  Q
    |||||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37028599 ggtgtaagaatgatgtattcggtgagagttgatgcaagaatatctgatagtttaatttaattttccaaaattaaggatgagtttgtttaaagataatttt 37028500  T
Q  532 gaccaagtgtagatatggaagaagaaaataaaaccgactgtttaaaacaacgtaacgtaacagatctagagaaaaatacgtgacattacgtacggaacaa 631  Q
    |||||||||||||||||                   || |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  37028499 gaccaagtgtagatatg-------------------acggtttaaaacaacgtaacgtaacagatctagagaaaaatacgtgatattacgtacg-aacaa 37028420  T
Q  632 gtatataatgcagggaaacttgtgagaccttgaaatattcgaagagaaacctcgttagaaatccttcaactccgaaggnnnnnnnnnnnnnnnnnnnnng 731  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |    
T  37028419 gtatttaatgcagagaaacttgtgagaccttgaaatattcgaagagaaacctcgttagaaatccttcaactccgaaggcaacaaacaaacaaacaaaa-g 37028321  T
Q  732 agaatcaagaatgtatcattattcttcaaatcggcagaactaccaaaacacagatgataatggcttagccttcattgatgctgatcatgtcaagtttcca 831  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37028320 agaatcaagaatgtatcattattcttcaaatcagcagaactaccaaaacacagatgataatggcttagccttcattgatgctgatcatgtcaagtttcca 37028221  T
Q  832 acacactcagatggttttatttcaaaagagaatgcgtcaactgatgaaaacaaagttcctccacttgtgaataagatcaagaaagggcattatcattggg 931  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  37028220 acacactcagatggttttatttcaaaagagaatgtgtcagctgatgaaaacaaagttcctccacttgtgaataagatcaataaagggcagtatcattggg 37028121  T
Q  932 atgaagaacaacacaggtatatacttattataattatttcagaaagtaattaactttacacgtga-tttgtttaannnnnnnactttaattatttttg-t 1029  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||||       |||||||||||||||| |    
T  37028120 atgaagaacaacacaggtatatac---ttataattatttcagaaagtaattaactttacacgtgattttgtttaatttttttactttaattatttttgtt 37028024  T
Q  1030 catgtacgtg-atgagtctatgcatgatgagaa--tcataaaaagatttggagaaca-tacttttta 1092  Q
    |||||||||| ||||||||||||||||| ||||   ||||||||||||||||||||| |||||||||    
T  37028023 catgtacgtgaatgagtctatgcatgataagaaatccataaaaagatttggagaacattacttttta 37027957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 37028691 - 37028644
Alignment:
Q  12 gaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  37028691 gaaccactcatgaccatttttgtttctatttccttaattaaaatcaca 37028644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 36384315 - 36384366
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || || |||||||||||| |||||||||||||||||||||    
T  36384315 acaagaaccacccaccatcatttatgtttccatttccttaattaaaatcaca 36384366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 41677774 - 41677727
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctcat 479  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  41677774 ggtgtaagaatgatgtattgagtgagagttcatgcaagaatatctcat 41677727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 47459112 - 47459161
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcac 58  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||||||||||    
T  47459112 acaagaaccac-catcatcatttatgtttccatttccttaattaaaatcac 47459161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 41677869 - 41677820
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatca 57  Q
    |||| |||||| || ||||||||||||||| |||||||||||||||||||    
T  41677869 acaataaccacccaccaccatttatgtttccatttccttaattaaaatca 41677820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 432 - 476
Target Start/End: Complemental strand, 43824238 - 43824194
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatct 476  Q
    |||||||||||||| | ||| ||||||||||||||||||||||||    
T  43824238 ggtgtaagaatgatgtgttgagtgagagttgatgcaagaatatct 43824194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 19563399 - 19563352
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctcat 479  Q
    |||||||||||||| | ||||||||||||| |||||||||||| ||||    
T  19563399 ggtgtaagaatgatgtcttgggtgagagtttatgcaagaatatttcat 19563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 43824332 - 43824285
Alignment:
Q  10 aagaaccactcatcaccatttatgtttctatttccttaattaaaatca 57  Q
    ||||||||| || ||||||||||||||  |||||||||||||||||||    
T  43824332 aagaaccacccaccaccatttatgttttcatttccttaattaaaatca 43824285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 19563492 - 19563442
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcac 58  Q
    |||| |||||| || ||||||||||||||  ||||||||||||||||||||    
T  19563492 acaaaaaccacccaccaccatttatgttttcatttccttaattaaaatcac 19563442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 102 - 385
Target Start/End: Original strand, 55852 - 56135
Alignment:
Q  102 cgaaatctttccgaagtgagagaaggagggaaggcgtgctacaactaacataacagccagctgaagctagctagctaggctagcgcgcaatggctttctc 201  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55852 cgaaatctttccgaagtgagagaaggagggaaggcgcgctacaactaacataacagccagctgaagctagctagctaggctagcgcgcaatggctttctc 55951  T
Q  202 tgataggggctcgcttcttcaagctccgcccaacctatacaaggtgctgctcgctttctctcagccaccagtggcttatgtagtggtcggcattcctacg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55952 tgataggggctcgcttcttcaagctccgcccaacctatacaaggtgctgctcgctttctctcagccaccagtggcttatgtagtggtcggcattcctacg 56051  T
Q  302 tgctcctctttgccccctacttaagaatccaaaggtcacctttggctgttgtcttgacgctttggttacgaaagtagccggggt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56052 tgctcctctttgccccctacttaagaatccaaaggtcacctttggctgttgtcttgacgctttggttacgaaagtagccggggt 56135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 103 - 378
Target Start/End: Complemental strand, 55258 - 54983
Alignment:
Q  103 gaaatctttccgaagtgagagaaggagggaaggcgtgctacaactaacataacagccagctgaagctagctagctaggctagcgcgcaatggctttctct 202  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||    
T  55258 gaaatctttccgaagtgagagaaggagggaaggctcgctacaactaacataacagccagctaaagctagctagctaggctagtgcgcattgactttctct 55159  T
Q  203 gataggggctcgcttcttcaagctccgcccaacctatacaaggtgctgctcgctttctctcagccaccagtggcttatgtagtggtcggcattcctacgt 302  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55158 gataggggctcgcttcttcaagctccgcccaatctatacaaggtgcttctcgctttctctcagccactagtggcttatgtagtggtcggcattcctacgt 55059  T
Q  303 gctcctctttgccccctacttaagaatccaaaggtcacctttggctgttgtcttgacgctttggttacgaaagtag 378  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55058 gctcctctttgccccctacttaagaatccaaaggttacctttggctgttgtcttgacgctttggttacgaaagtag 54983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 6943712 - 6943663
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6943712 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 6943663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 9935708 - 9935659
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9935708 tggcttgtaaacacaaaagtactgtacgcgcttttctgaaaagatcaggt 9935659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 24879076 - 24879127
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    |||| |||||| || ||||||||||||||| |||||||||||||||||||||    
T  24879076 acaaaaaccacccaccaccatttatgtttccatttccttaattaaaatcaca 24879127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 5598416 - 5598367
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||||||    
T  5598416 tggcttgtaaacacaaaagtatcatacgcacttttttgaaaagatcaggt 5598367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 427 - 477
Target Start/End: Original strand, 24879166 - 24879216
Alignment:
Q  427 gatcaggtgtaagaatgatctattgggtgagagttgatgcaagaatatctc 477  Q
    |||| ||||||||||| || | ||||||||||||| |||||||||||||||    
T  24879166 gatcgggtgtaagaataatgtgttgggtgagagttcatgcaagaatatctc 24879216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 18303376 - 18303425
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18303376 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 18303425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 18031945 - 18031896
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  18031945 tggcttgtaaacacaaaagtattgtacgcgcttttttgaaaagatcaggt 18031896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 50470141 - 50470094
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaat 55  Q
    ||||||||||| || ||||||||||||||| |||||||||| ||||||    
T  50470141 acaagaaccacccaccaccatttatgtttccatttccttaaataaaat 50470094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 5e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 13235543 - 13235592
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13235543 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 13235592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 2663362 - 2663311
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  2663362 acaagaaccacccaccaccatttatgtttccatttccttaattaaaatcaca 2663311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 3984570 - 3984519
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  3984570 acaagaaccacccaccaccatttatgtttctatttccttagttaaaatcaca 3984519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 49323173 - 49323224
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  49323173 acaagaaccacccaccaccatttatgtttccatttccttaattaaaatcaca 49323224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 35637215 - 35637265
Alignment:
Q  9 caagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    |||||||||| || ||| ||||||||||| ||||||| |||||||||||||    
T  35637215 caagaaccacccaccactatttatgtttccatttcctaaattaaaatcaca 35637265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 28212644 - 28212599
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctc 477  Q
    |||||||||||||| | |||| |||||||| |||||||||||||||    
T  28212644 ggtgtaagaatgatgtgttggatgagagtttatgcaagaatatctc 28212599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 5e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 11936555 - 11936604
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11936555 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 11936604  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 37874579 - 37874530
Alignment:
Q  385 tggcttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37874579 tggcttgtaaacacaaaagtattgtacgcgcttttttgaaaagatcaggt 37874530  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 18058909 - 18058858
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  18058909 acaagaaccacccaccaccatttatgtttccatttccttaattaaaatcaca 18058858  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 39822986 - 39823031
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctc 477  Q
    |||||||||||||| | |||||||||||||||||||| ||||||||    
T  39822986 ggtgtaagaatgatgtgttgggtgagagttgatgcaataatatctc 39823031  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 5737334 - 5737282
Alignment:
Q  6 caacaagaaccactcatcaccatttatgtttctatttccttaattaaaatcac 58  Q
    ||||||||||||| || ||||||||| ||||| ||||||||||| ||||||||    
T  5737334 caacaagaaccacccaccaccatttacgtttccatttccttaatgaaaatcac 5737282  T

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Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 329 - 385
Target Start/End: Complemental strand, 34289737 - 34289681
Alignment:
Q  329 tccaaaggtcacctttggctgttgtcttgacgctttggttacgaaagtagccggggt 385  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  34289737 tccaaaggtcacatttggctgttgtcttgacgctttggttaagaaagtagccggggt 34289681  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 36676384 - 36676334
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcac 58  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  36676384 acaagaaccacccatcaccatttatgtttccatttccttaattaaaatcac 36676334  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 29525863 - 29525914
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||| |||||||||||||||||||||    
T  29525863 acaagaaccacacaccaccatttatgtttccatttccttaattaaaatcaca 29525914  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 9305229 - 9305279
Alignment:
Q  9 caagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    |||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  9305229 caagaaccacccaccaccatttatgtttttatttccttaattaaaatcaca 9305279  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 35163127 - 35163075
Alignment:
Q  7 aacaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||| || || ||||||||||||||| |||||||||||||||||||||    
T  35163127 aacaagaactacccaccaccatttatgtttccatttccttaattaaaatcaca 35163075  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 432 - 482
Target Start/End: Original strand, 30233892 - 30233942
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctcataat 482  Q
    |||||||||||||| | || |||||||||| ||||||||||||||||||||    
T  30233892 ggtgtaagaatgatgtgttaggtgagagttcatgcaagaatatctcataat 30233942  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 27768888 - 27768937
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatca 57  Q
    ||||||||||| || |||||||||| |||| |||||||||||||||||||    
T  27768888 acaagaaccacccaccaccatttatatttccatttccttaattaaaatca 27768937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 41774935 - 41774984
Alignment:
Q  6 caacaagaaccactcatcaccatttatgtttctatttccttaattaaaat 55  Q
    ||||||||||||  || ||||||||||||||| |||||||||||||||||    
T  41774935 caacaagaaccatccaccaccatttatgtttccatttccttaattaaaat 41774984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 42913857 - 42913902
Alignment:
Q  389 ttgtaaacacaaaagtactgtacgcgcttttttgaaaagatcaggt 434  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||    
T  42913857 ttgtaaacacaaaagttttgtatgcgcttttttgaaaagatcaggt 42913902  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 24147184 - 24147135
Alignment:
Q  10 aagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    |||||||||  ||||||||||||||||| |||| ||||||||||||||||    
T  24147184 aagaaccaccgatcaccatttatgtttccatttacttaattaaaatcaca 24147135  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 2134747 - 2134798
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||  |||||||| ||||||||||||    
T  2134747 acaagaaccacccaccaccatttatgttttcatttccttgattaaaatcaca 2134798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 20257036 - 20256985
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    ||||||||||| || ||||||||||||||| |||||||||  ||||||||||    
T  20257036 acaagaaccacccaccaccatttatgtttccatttccttagctaaaatcaca 20256985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 43146342 - 43146393
Alignment:
Q  8 acaagaaccactcatcaccatttatgtttctatttccttaattaaaatcaca 59  Q
    |||||| |||| || ||||||||| ||||| |||||||||||||||||||||    
T  43146342 acaagacccacccaccaccatttacgtttccatttccttaattaaaatcaca 43146393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 432 - 478
Target Start/End: Original strand, 38089067 - 38089113
Alignment:
Q  432 ggtgtaagaatgatctattgggtgagagttgatgcaagaatatctca 478  Q
    ||||||||||| || | |||| |||||||||||||||||||||||||    
T  38089067 ggtgtaagaataatgtgttggatgagagttgatgcaagaatatctca 38089113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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